GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:24:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_28305.
FX708402.1:164-183
TCAGCATTAGGGTTTGTAGTCCAAGAACTC164ATGTTTCCGACCACATTTGCTCCGAACATCTTCGGACCATCTTGAGGCAA
Brassica rapa subsp. pekinensis clone KBrB126H02, complete sequence.
CU928182.1:3349-3368
TCAGCATTAGGGTTTGTAGTCCAAGAACTC3349ATGTTTCCGACCACATTTGCTCCGAACATCTTCGGACCATCTTGAGGCAA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:6813655-6813674
TCAGCATTAGGGTTTGTAGTCCAAGAACTC6813655ATGTTTCCGACCACATTTGCTCCGAACATCTTCGGACCATCTTGAGGCAA
Brassica napus aintegumenta 2 mRNA, complete cds.
DQ211970.1:1576-1595
TTGCCTCAAGATGGTCCGAAGATGTTCGGA1576GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:19691657-19691676
TTGCCTCAAGATGGTCCGAAGATGTTCGGA19691657GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA
Brassica rapa genome, scaffold: A08.
LR031575.1:18673930-18673949
TTGCCTCAAGATGGTCCGAAGATGTTCGGA18673930GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:24412337-24412356
TTGCCTCAAGATGGTCCGAAGATGTTCGGA24412337GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGTTTCCGACCACATTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTTTCCGACCACATTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTTTCCGACCACATTTGC&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAATGTGGTCGGAAACAT&k=0&no_gap=0&offset=0&limit=47
0.134 | 0.003 | cgi_end;

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