GGGenome | Results

データベース：

ミスマッチ/ギャップを許容ミスマッチのみ許容：塩基まで (検索する配列長の25%まで)
双方向を検索＋方向のみ検索－方向のみ検索

2025-04-03 19:21:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 3 from patent US 6593084.
AR353564.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

Sequence 29 from Patent WO0240666.
AX431396.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

Sequence 89 from Patent WO2006075084.
CS359750.1:1126-1150

GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGCTGGTGGTGCAATCATTTCCCCCACTGGCAATCTTCC

Sequence 92 from Patent WO2006075084.
CS359753.1:1132-1156

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGCTGGTGGTTAAAGTGTTACTTAAAGATTGACCAACTG

Sequence 93 from Patent WO2006075084.
CS359754.1:1132-1156

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGCTGGTGGTGTTGGTTTCATCCGCCTTTCTGGTTTTCG

Sequence 94 from Patent WO2006075084.
CS359755.1:1132-1156

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGCTGGTGGTGTTGTTATGACGAAGAATTAGGGTGTTCA

Sequence 107 from Patent WO2006075084.
CS359768.1:1126-1150

GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGCTGGTGGGCACGTAAACTAGAACAATATTTAGAAAGA

Sequence 108 from Patent WO2006075084.
CS359769.1:1132-1156

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGCTGGTGGAGTGCGGTAGAGCAGCTCAGAGGTGAAGGC

JP 2004512852-A/20: Fat Regulated Genes, Uses Thereof, and Compounds for Modulating Same.
DD010082.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

JP 2003235570-A/3: Polypeptide having interaction with hibernation-specific protein and its utilization.
DJ389551.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

Sequence 11 from patent US 8349562.
GZ703048.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

Sequence 11 from patent US 9109258.
HL076160.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

WO 1998045431-A/9: Cancer metastasis-associated gene.
HV447448.1:1-25

1ATTAACCCTCACTAAATGCTGGTGG

Oryza sativa mRNA, expressed in immature anther, clone DD9R5-1-4.
AB021957.1:2-26

T2ATTAACCCTCACTAAATGCTGGTGGTTCGTTCTTGGTTCTTGCCAGAGAAGATTT

Bombyx mandarina whole body EST, clone H87.
AT001107.1:11-35

GAATTCGATT11ATTAACCCTCACTAAATGCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCG

Bombyx mandarina whole body EST, clone H109.
AT001109.1:57-81

GGCCGCCATGGCGGCCGCGGGAATTCGATT57ATTAACCCTCACTAAATGCTGGTGGAGGTCCGTATCGGTCCTGACGTGCAAATCG

8 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi311, mRNA sequence.
CB275458.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGCACGGAGTTAGCCGGTGCTTATTCTTTGGG

9 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi312, mRNA sequence.
CB275459.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGTGGTCAAGGATCTGGCTCTGGACATGGTGG

10 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi314, mRNA sequence.
CB275460.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGTGGTCAAGGGTCTGGCTCTGGACGTCTTGG

11 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi315, mRNA sequence.
CB275461.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGGCTTGGCCATCTTTGGTCTTATTGCCGCAG

EST0441 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991398.1:16-40

AATTCACTAGTGATT16ATTAACCCTCACTAAATGCTGGTGGACCGTGCATAACCATACAATATGTGACCAA

EST0451 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991399.1:4-28

ATT4ATTAACCCTCACTAAATGCTGGTGGAGACTATACTCGGGACATTGGTTATCTCCA

EST0452 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991400.1:19-43

GCGAATTCACTAGTGATT19ATTAACCCTCACTAAATGCTGGTGGTGTTTTCCTTGTTACCATTCATTTCCCTCC

54-6 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605611.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGGACTGTAAACAGTACAGTCACCTTGGAAAG

54-41 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605646.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGGAATGCAAATTGGTGCAGCTGCTATGGAAA

DD-L18-2 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Pectinacetylesterase, mRNA sequence.
CX779674.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGACTTGGTGCTATACTACAATGTGATAACTT

PRABD_06 Differentially expressed genes during needle maturation Pinus radiata cDNA, mRNA sequence.
GO270987.1:5-29

GATT5ATTAACCCTCACTAAATGCTGGTGGGTCCACAATATCTCTCACATATATTGCATC

PRABD_07 Differentially expressed genes during needle maturation Pinus radiata cDNA, mRNA sequence.
GO270988.1:11-35

ACTAGTGATT11ATTAACCCTCACTAAATGCTGGTGGTCGTGATTTGGATGCCTTTGTTGCTTTTAT

PRABD_08 Differentially expressed genes during needle maturation Pinus radiata cDNA, mRNA sequence.
GO270989.1:5-29

GATT5ATTAACCCTCACTAAATGCTGGTGGCTTAGTTAGTTAATGTAGTACAAGTATATC

cembMN04 Differential display of COTTON GENOTYPE, leaf, after 24 hours of salt stress Gossypium arboreum cDNA clone P3T9-b 3', mRNA sequence.
JG294132.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGGCAAAGATGGAGAGGGTGCCAAGACAACGA

Cp-59 C. parvum HindIII genomic library Cryptosporidium parvum genomic, genomic survey sequence.
DX918428.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGTGGTTGAGATTCCCTATAATAAAATTTTTT

Dendrobium grex Madame Thong-IN ovg37 mRNA, partial sequence.
AF100334.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGTTGGTTTCGGTTGCGTGAGAGATGCATTCA

Oryza sativa blast-resistant mRNA, partial sequence.
AF450251.1:1-25

1ATTAACCCTCACTAAATGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACG

Sequence 89 from Patent WO2006075084.
CS359750.1:1445-1469

TCCGATCTACAAAAGGATCCATAGTCTCAT1445CCACCAGCATTTAGTGAGGGTTAATAATCACTAGTGAATTCGCGGCCGCGTCGAC

Sequence 92 from Patent WO2006075084.
CS359753.1:2307-2331

AATCCAGATAATGAGAGGTAGTGTGTTTGA2307CCACCAGCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC

Sequence 93 from Patent WO2006075084.
CS359754.1:2188-2212

TGCCTGTTAGTGCTGATGGGAGACGGCAGA2188CCACCAGCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC

Sequence 94 from Patent WO2006075084.
CS359755.1:1521-1545

TCCCGGTGTCTTTTCCACCGGCTCAGCCTC1521CCACCAGCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC

Sequence 108 from Patent WO2006075084.
CS359769.1:1453-1477

CAGTCAGGCAAGCCTTGGCTGATCCCAGGG1453CCACCAGCATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC

Oryza sativa mRNA, expressed in immature anther, clone DD2R3-1.
AB021948.1:1125-1149

TGCAGCCTCAGTCCATATAAAACAGTCAAT1125CCACCAGCATTTAGTGAGGGTTAATAATCACTAGTGCGGCCGCCTGCAGGTCGAC

Oryza sativa mRNA, expressed in immature anther, clone DD9R1-1-2.
AB021950.1:1066-1090

CATTTCATCCTGGATTAAACTGAACAACTG1066CCACCAGCATTTAGTGAGGGTTAATA

Oryza sativa mRNA, expressed in immature anther, clone DD9R5-1-4.
AB021957.1:1087-1111

ACTGTTTGTGTTATTCTGCACCTTATGCTG1087CCACCAGCATTTAGTGAGGGTTAATA

8 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi311, mRNA sequence.
CB275458.1:496-520

GTACCGTTCGACTTGCATGTGTTAAGCATG496CCACCAGCATTTAGTGAGGGTTAAT

11 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi315, mRNA sequence.
CB275461.1:336-360

GGTCTTATTGCCGCAGAGAGCGGTGCTACG336CCACCAGCATTTAGTGAGGGTTAAT

EST0451 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991399.1:399-423

ATGGAAAGCGCCAGCCGNTGCTCTAATCTG399CCACCAGCATTTAGTGAGGGTTAATAATCGAATTCC

EST0472 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991401.1:239-263

TCTCCACACCTTCCTTGATAAAGTCAGCAA239CCACCAGCATTTAGTGAGGGTTAATAATCGAATTCCCGCG

54-39 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605644.1:266-290

TGATTTATGTTTTCTCCGCTTGATGCTTGT266CCACCAGCATTTAGTGAGGGTTAAT

DD6 Fusarium graminearum Differential Display library Fusarium graminearum cDNA, mRNA sequence.
DY588296.1:334-358

CACTCCCATGATGTTCAGAACCTTGACCTA334CCACCAGCATTTAGTGAGGGTTAATAAGGGCGAATTCCAGCAC

DD3a Fusarium culmorum Differential Display library Fusarium culmorum cDNA, mRNA sequence.
DY763106.1:255-279

TTGTTGTCACCGAGACTGTTGCCATCTCCA255CCACCAGCATTTAGTGAGGGTTAATAAAGGGCGAATTCCAGCACACTG

3 Phytophthora Subtractive Fwd Library Phytophthora capsici cDNA clone Pc-54, mRNA sequence.
DY985172.1:215-239

CTAGATACTTGATCTGCACATCTATATTGT215CCACCAGCATTTAGTGAGGGTTAATAAGGGCAVWTTYAGGAAAACSCTGGCGTTA

BO9 Durum wheat leaf tissue Triticum turgidum subsp. durum cDNA clone BO9, mRNA sequence.
EC907729.1:185-209

GTGGTTGGAGAAGATTAGGGAGGAGAGGTC185CCACCAGCATTTAGTGAGGGTTAATAATCACTAGTGAATTC

JZS119d chicken breast blister (keel cyst) related genes Gallus gallus cDNA clone JZS119 5', mRNA sequence.
GW317169.1:69-93

AATATGCAACAAGTTTTACTCAGCTTAAGT69CCACCAGCATTTAGTGAGGGTTAAT

OsJRUA001189 Oryza sativa Express Library Oryza sativa Indica Group genomic, genomic survey sequence.
CL957083.1:1387-1411

TGCAGCCTCAGTCCATATAAAACAGTCAAT1387CCACCAGCATTTAGTGAGGGTTAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

タブ区切りテキスト → 表示 | ダウンロード
エクセル等の表計算ソフトに直接コピペできます。
CSV形式 → 表示 | ダウンロード
エクセル等の表計算ソフトにて開くことができます。
BED形式 → リンク | ダウンロード
GFF形式 → リンク | ダウンロード
JSON形式 → リンク | ダウンロード

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTAACCCTCACTAAATGCTGGTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTAACCCTCACTAAATGCTGGTGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
1.176 | 1.168 | search_plus_done; http://172.18.8.135:50400/match?q=ATTAACCCTCACTAAATGCTGGTGG&k=0&no_gap=0&offset=0&limit=50
1.696 | 0.520 | search_minus_done; http://172.18.8.135:50400/match?q=CCACCAGCATTTAGTGAGGGTTAAT&k=0&no_gap=0&offset=0&limit=17
1.708 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).