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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 12:51:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus gln gene for plastid glutamine synthetase, exons 1-12.
AJ271909.1:1717-1736
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG1717ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:50020974-50020993
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG50020974ATTACAGTAGATCTCGGGTCCACCACGTACTTATTAATCTATAATTCTCT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:13407615-13407634
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG13407615ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:7781473-7781492
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG7781473ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica napus genome assembly, chromosome: C04.
HG994368.1:43717087-43717106
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG43717087ATTACAGTAGATCTCGGGTCCACCACGTACTTATTAATCTATAATTCTCT
Brassica rapa genome, scaffold: A04.
LR031576.1:7058383-7058402
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG7058383ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:43145555-43145574
TCTTTGCTAATTTGGCTTCTAAAAAGGTGG43145555ATTACAGTAGATCTCGGGTCCACCACGTACTTATTAATCTATAATTCTCT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:7302081-7302100
TCTTTGCTAATCTGGCTTCTAAAAAGGTGG7302081ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATCTATAGTTCTCT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:30365182-30365201
TTCTTTGCTGATTTGCTTCTAAAAAGGTGG30365182ATTACAGTAGATCTCGGGTCCACCACTTACTAATTAATATACAATTCTCT
Pseudoips prasinana genome assembly, chromosome: 21.
OX621255.1:6409249-6409268
GCTACATATTCCACTGTGGTTCAGTTTATC6409249ATTACAGTAGATCTCGGGTCTTTCCATAGCGTTTAGTCTTTTGGGGCGAT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:23285319-23285338
AGAGAATTGTATATTAATTAGTAAGTGGTG23285319GACCCGAGATCTACTGTAATCCACCTTTTTAGAAGCAAATCAGCAAAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTACAGTAGATCTCGGGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTACAGTAGATCTCGGGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.348 | 0.339 | search_plus_done; http://172.18.8.135:50400/match?q=ATTACAGTAGATCTCGGGTC&k=0&no_gap=0&offset=0&limit=50
0.450 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=GACCCGAGATCTACTGTAAT&k=0&no_gap=0&offset=0&limit=40
0.451 | 0.001 | cgi_end;

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