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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:51:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS2CO21TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896917.1:299-320
AAGGTTTATGGAGATACGCCGGAGGCGAGT299ATTAGCGAGGAGGGAGATGATGACTCAACAAGTGGATCAAACGATGGAGATG
RR2F268TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD541902.1:588-609
AAGGTTTATGGAGATACGCCGGAGGCGAGT588ATTAGCGAGGAGGGAGATGATGATGACTCAACAAGTGGATCAAACGATGGAA
RS3FX95TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD954487.1:548-569
AAGGTTTATGGAGATACGCCAGAGGCGAGT548ATTAGCGAGGAGGGAGATGATGATGACTCAACAAGCGGATCAAACGATGGAG
TSA: Raphanus sativus RS22780 mRNA sequence.
JT807327.1:1020-1041
AAGGTTTATGGAGATACGCCAGAGGCGAGT1020ATTAGCGAGGAGGGAGATGATGATGACTCAACAAGCGGATCAAACGATGGAG
RS2CO21JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900768.1:562-583
CATCTCCATCGTTTGATCCACTTGTTGAGT562CATCATCTCCCTCCTCGCTAATACTCGCCTCCGGCGTATCTCCATAAACCTT
RS3FX95JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD950740.1:606-627
CTCCATCGTTTGATCCGCTTGTTGAGTCAT606CATCATCTCCCTCCTCGCTAATACTCGCCTCTGGCGTATCTCCATAAACCTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8968.
FX662500.1:527-548
CTCCATCGTTTGATCCGCTTGTTGAGTCAT527CATCATCTCCCTCCTCGCTAATACTCGCCTCTGGCGTATCTCCATAAACCTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4358.
FX793297.1:437-458
CATCTCCATCGTTTGATCCACTTGTTGAGT437CATCATCTCCCTCCTCGCTAATGCTCCCCTCCGGCGTATCTCCATAAACCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTAGCGAGGAGGGAGATGATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTAGCGAGGAGGGAGATGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.529 | 0.521 | search_plus_done; http://172.18.8.135:50400/match?q=ATTAGCGAGGAGGGAGATGATG&k=0&no_gap=0&offset=0&limit=50
0.792 | 0.262 | search_minus_done; http://172.18.8.135:50400/match?q=CATCATCTCCCTCCTCGCTAAT&k=0&no_gap=0&offset=0&limit=46
0.794 | 0.003 | cgi_end;

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