GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-01 02:35:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Canis lupus genome assembly, chromosome: 2.
HG994387.1:58603714-58603733
TAAGTTTAGGGATGGGGTTAAGGGTTAATG58603714ATTAGGGTTATGGTTGGGGCTAGGGTTATGGGCTATGGCTAGGGTTTGTT
Sylvilagus floridanus genome assembly, chromosome: 16.
OX463238.1:4803055-4803074
ATTTAGGGTTAGGGTTATGGTAGGGCTAGG4803055ATTAGGGTTATGGTTGGGGCTTAATGTTTGGTTTTGCCTTAGTACTATGG
Sylvilagus floridanus genome assembly, chromosome: 22.
OX463244.1:143020586-143020605
GATTTGGGCTAGGGTTATGGTAGGGCTAGG143020586ATTAGGGTTATGGTTGGGGCTTAATGTTTGGTTTAGCCTTAGGATTATGA
Vigna angularis mRNA, clone: VES18C07.
HX948927.1:658-677
GGAATGGGAATATCCCCTGTAGAAGACGAA658ATTAGGGTTATGGTTGGGGCTGGAATTGGGGGTGGGGTTAGGGTTAGGGT
A BAC library has been constructed from PN40024 genotype using the restriction enzyme HindIII (clone prefix : VV40024H).
CU860572.1:508-527
CGATGACGATCCGCCGGAATACACAACGGC508ATTAGGGTTATGGTTGGGGCTAGGGGTGATC
Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
AP015037.1:47666156-47666175
GGAATGGGAATATCCCCTGTAGAAGACGAA47666156ATTAGGGTTATGGTTGGGGCTGGGATTGGGGGTGGGGTTAGGGTTAGGGT
Cenchrus purpureus cultivar elephant grass chromosome B1.
CP053461.1:69531527-69531546
GCGCTGCGGCTGCGCGGTGGGGGGGAAGTG69531527ATTAGGGTTATGGTTGGGGCGCCGCGCTTTATATGTGGCCAGCCGTTGGG
Vitis vinifera cv. PN40024, annotated scaffold_58.assembly12x.
FN594967.1:2037479-2037498
CGATGACGATCCGCCGGAATACACAACGGC2037479ATTAGGGTTATGGTTGGGGCTAGGGCTGATCTTGTCCTTCCCAGCCTTCA
Canis Familiaris chromosome 2, clone XX-252E5, complete sequence.
AC186975.3:97696-97715
AACAAACCCTAGCCATAGCCCATAACCCTA97696GCCCCAACCATAACCCTAATCATTAACCCTTAACCCCATCCCTAAACTTA
Canis lupus familiaris breed Labrador retriever chromosome 17a.
CP050603.1:63795272-63795291
AACAAACCCTAGCCATAGCCCATAACCCTA63795272GCCCCAACCATAACCCTAATCATTAACCCTTAACCCCATCCCTAAACTTA
Canis lupus familiaris breed Labrador retriever chromosome 17b.
CP050614.1:63814151-63814170
AACAAACCCTAGCCATAGCCCATAACCCTA63814151GCCCCAACCATAACCCTAATCATTAACCCTTAACCCCATCCCTAAACTTA
Sequence 323 from Patent EP2542563.
JB225341.1:470-489
TGAAGGCTGGGAAGGACAAGATCAGCCCTA470GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Sequence 323 from patent US 9676831.
KH781486.1:470-489
TGAAGGCTGGGAAGGACAAGATCAGCCCTA470GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Sequence 323 from Patent EP3184538.
LP939918.1:470-489
TGAAGGCTGGGAAGGACAAGATCAGCCCTA470GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG29YH18FM1.
FQ416615.1:697-716
TGAAGGCTGGGAAGGACAAGATCAGCCCTA697GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCCGGCGATC
Vitis vinifera 5-prime EST SS0ABG26YK24FM1.
FQ417600.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG23YG04FM1.
FQ418737.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG16YM15FM1.
FQ421083.1:735-754
TGAAGGCTGGGAAGGACAAGATCAGCCCTA735GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG14YP16FM1.
FQ421718.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG13YF24FM1.
FQ422275.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG39YA21FM1.
FQ429588.1:690-709
TGAAGGCTGGGAAGGACAAGATCAGCCCTA690GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG38YP11FM1.
FQ429619.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG38YH17FM1.
FQ429782.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG37YB21FM1.
FQ430245.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG35YI07FM1.
FQ430801.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG74YJ15FM1.
FQ432772.1:690-709
TGAAGGCTGGGAAGGACAAGATCAGCCCTA690GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG69YB10FM1.
FQ435019.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG66YE18FM1.
FQ435978.1:690-709
TGAAGGCTGGGAAGGACAAGATCAGCCCTA690GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCCTCTTC
Vitis vinifera 5-prime EST SS0ACG15YI01FM1.
FQ441739.1:533-552
TGAAGGCTGGGAAGGACAGGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG79YK06FM1.
FQ447815.1:700-719
GAAGGCTGGGAAGGACAAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ABG79YG09FM1.
FQ447904.1:697-716
TGAAGGCTGGGAAGGACAAGATCAGCCCTA697GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG39YE21FM1.
FQ450047.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG32YG19FM1.
FQ452363.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG28YK20FM1.
FQ453954.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG58YN03FM1.
FQ459677.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG53YA13FM1.
FQ461602.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG52YL09FM1.
FQ461706.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG52YA23FM1.
FQ461934.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG45YC20FM1.
FQ464580.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCCCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG8YO23FM1.
FQ478301.1:700-719
TGAAGGCTGGGAAGGACAAGATCAGCTCTA700GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG8YN22FM1.
FQ478321.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera 5-prime EST SS0ACG74YF02FM1.
FQ479180.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vigna angularis mRNA, clone: VEPS02N22.
HX939521.1:533-552
ACCCTAACCCTAACCCCACCCCCAATCCCA533GCCCCAACCATAACCCTAATTTCGTCTTCTACAGGGGATATTCCCATTCC
Vigna angularis mRNA, clone: VES06H12.
HX944519.1:344-363
ACCCTAACCCTAACCCCACCCCCAATCCCA344GCCCCAACCATAACCCTAATTTCGTCTTCTACAGGGGATATTCCCATTCC
Vitis rotundifolia cultivar Noble chromosome 8.
CP092933.1:7354428-7354447
TGAAGGCTGGGAAGGACAAGATCAGCCCTA7354428GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera cultivar Pinot Noir 40024 chromosome 8.
CP126655.1:10065553-10065572
TGAAGGCTGGGAAGGACAAGATCAGCCCTA10065553GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis x doaniana cultivar PI 588149 chromosome 8.
CP128334.1:10418208-10418227
TGAAGGCTGGGAAGGACAAGATCAGCCCTA10418208GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis x doaniana cultivar PI 588149 chromosome 8.
CP128353.1:9955716-9955735
TGAAGGCTGGGAAGGACAAGATCAGCCCTA9955716GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0ACG66YN08.
FQ380370.1:795-814
TGAAGGCTGGGAAGGACAAGATCAGCCCTA795GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0ACG1YD06.
FQ381173.1:533-552
TGAAGGCTGGGAAGGACAAGATCAGCCCTA533GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0ABG3YG15.
FQ382884.1:804-823
TGAAGGCTGGGAAGGACAAGATCAGCCCTA804GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0AFA5YC12.
FQ392571.1:543-562
TGAAGGCTGGGAAGGACAAGATCAGCCCTA543GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0AFA4YM15.
FQ392653.1:546-565
TGAAGGCTGGGAAGGACAAGATCAGCCCTA546GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGGGGATCGTCATCA
Vitis vinifera clone SS0AFA2YA22.
FQ393230.1:545-564
TGAAGGCTGGGAAGGACAAGATCAGCCCTA545GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0AFA24YN18.
FQ393675.1:582-601
TGAAGGCTGGGAAGGACAAGATCAGCCCTA582GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG
Vitis vinifera clone SS0AFA1YM10.
FQ394607.1:543-562
TGAAGGCTGGGAAGGACAAGATCAGCCCTA543GCCCCAACCATAACCCTAATGCCGTTGTGTATTCCGGCGGATCGTCATCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTAGGGTTATGGTTGGGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTAGGGTTATGGTTGGGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.207 | 0.198 | search_plus_done; http://172.18.8.135:50400/match?q=ATTAGGGTTATGGTTGGGGC&k=0&no_gap=0&offset=0&limit=50
2.269 | 2.062 | search_minus_done; http://172.18.8.135:50400/match?q=GCCCCAACCATAACCCTAAT&k=0&no_gap=0&offset=0&limit=42
2.300 | 0.031 | cgi_end;

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