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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 11:55:20, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 71 unordered pieces.
FJ789647.1:59186-59205
CAATCAAGGAAAAGAGAAACGACGGTGGTG59186ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
AC189221.2:48260-48279
CAATCAAGGAAAAGAGAAACGACGGTGGTG48260ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:10626398-10626417
CAATCAAGAAAAAGAGAAACGACGGTGGTG10626398ATTCACGAGGAATGACGTGTAACGCCAGCTGTCCATCAAAGAGAGGCGCA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:12747095-12747114
ATCAAGAAAAAAAGAGAAACGACGGTGGTG12747095ATTCACGAGGAATGACGTGTAACGCCAGCTGTCTATCAGAGAGAGGCGCA
Draba incana genome assembly, chromosome: 15.
OY755216.1:4634478-4634497
CAATCAACAAAAAGAGAAGCGACGGTGTTG4634478ATTCACGAGGAATGACGTGTGATGACAGCTGTCGAAAGGAGTGAGGTGCA
Arabis hirsuta genome assembly, chromosome: 11.
OZ053308.1:2474532-2474551
CAATCAACAAAAAGAGAAGCGACGGTGGTG2474532ATTCACGAGGAATGACGTGTGGTGACAGCTGTCGAAAGGAGAGAGGTGCA
Arabis hirsuta genome assembly, chromosome: 13.
OZ053310.1:2918650-2918669
CAATCAACAAAAAGAGAAGCGACGGTGGTG2918650ATTCACGAGGAATGACGTGTGACGACAGCTGTCAAAAGGAGAGAGGTGCA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2705537-2705556
TGCGCCTCTCTTTGATGGACAGCTGGCGTT2705537ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 92 unordered pieces.
FJ789644.1:913836-913855
TGCGCCTCTCTTTGATGGACAGCTGGCGTT913836ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:60993237-60993256
TGCGCCTCTCTTTGATGGACAGCTGGCGTT60993237ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica napus cultivar Xiang5A chromosome 9.
CP151904.1:60609722-60609741
TGCGCCTCTCTTTGATGGACAGCTGGCGTT60609722ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica napus cultivar Xiang5A chromosome 18.
CP151913.1:44090126-44090145
TGCGCCTCTCTTTGATGGACAGCTGGCGTT44090126ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:44813813-44813832
TGCGCCTCTCTTTGATGGACAGCTGGCGTT44813813ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTCCTTGATTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:31138583-31138602
TGCGCCTCTCTTTGATGGACAGCTGGCGTT31138583ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica rapa genome, scaffold: A09.
LR031568.1:49123339-49123358
TGCGCCTCTCTTTGATGGACAGCTGGCGTT49123339ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:40423048-40423067
TGCGCCTCTCTTTGATGGACAGCTGGCGTT40423048ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:59595417-59595436
TGCGCCTCTCTTTGATGGACAGCTGGCGTT59595417ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTCTTGATTG
Arabis alpina genome assembly, chromosome: 5.
LT669792.1:24738160-24738179
ACCTCTCTTTGATCGACAGCTGTCATCATC24738160ACACGTCATTCCTCGTGAATCGCTACCGTCGCTTTTCTTTTTTCTTGATT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:31285855-31285874
TGCGCCTCTCTCTGATAGACAGCTGGCGTT31285855ACACGTCATTCCTCGTGAATCACCACCGTCGTTTCTCTTTTTTTCTTGAT
Draba incana genome assembly, chromosome: 16.
OY755217.1:29183561-29183580
TGCACCTCTCTCCTTTCGACAGCTGTCATC29183561ACACGTCATTCCTCGTGAATCAACACCGTCGCTTCTCTTTTTGTTGATTG
Draba verna genome assembly, chromosome: 5.
OZ174222.1:47437792-47437811
GCCTCTCTTTGGTCGACAGGTGGCAGAAGC47437792ACACGTCATTCCTCGTGAATCAACACCGTCGCTTCTCTTTTTTTGGTGAT
Draba verna genome assembly, chromosome: 6.
OZ174223.1:45438495-45438514
GCCTCTCTTTGGTCGACAGGTGGCAGAAGC45438495ACACGTCATTCCTCGTGAATCAACACCGTCGCTTCTCTTTTTTTGGTGAT
Draba verna genome assembly, chromosome: 18.
OZ174235.1:29505863-29505882
GCCTCTCTTTGATCGACAGCTGGCATTGTC29505863ACACGTCATTCCTCGTGAATCAAGTCTTTTTTTTTGTTGATTGGTGGTGC
Pungitius pungitius genome assembly, chromosome: 21.
OZ035033.1:7582542-7582561
ACGAGTGGAGTGTTAGCCTGAATGAGGCAA7582542ACACGTCATTCCTCGTGAATCGACATTTTCATTATTCTACACTGCGACTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTCACGAGGAATGACGTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCACGAGGAATGACGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.309 | 0.299 | search_plus_done; http://172.18.8.135:50800/match?q=ATTCACGAGGAATGACGTGT&k=0&no_gap=0&offset=0&limit=50
0.443 | 0.135 | search_minus_done; http://172.18.8.135:50800/match?q=ACACGTCATTCCTCGTGAAT&k=0&no_gap=0&offset=0&limit=43
0.455 | 0.012 | cgi_end;

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