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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:05:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus genomic DNA, chromosome 4, clone: LjB11J20, BM0992.
AP007729.2:60716-60735
GATGCAGACAAAACATCCGTGCTTTTCATC60716ATTCAGTAACAGAAATCCCGCCCAAAAAAAAGGAATTCTTTTGTTAATTT
Lotus japonicus genomic DNA, chromosome 4, clone: LjB26F10, BM1397.
AP008045.2:14276-14295
GATGCAGACAAAACATCCGTGCTTTTCATC14276ATTCAGTAACAGAAATCCCGCCCAAAAAAAAGGAATTCTTTTGTTAATTT
Lotus japonicus genomic DNA, chromosome 4, clone: LjT46M09, TM1411.
AP008056.2:24930-24949
GATGCAGACAAAACATCCGTGCTTTTCATC24930ATTCAGTAACAGAAATCCCGCCCAAAAAAAAGGAATTCTTTTGTTAATTT
Marasmarcha lunaedactyla genome assembly, chromosome: 6.
OV281345.1:27725206-27725225
ATTATTTGATGCTATGTTGCCGCTCTTATA27725206ATTCAGTAACAGAAATCCCGGATATTATTTGTAGTGTTACTGGATTACTG
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:60354743-60354762
AAATTAACAAAAGAATTCCTTTTTTTTGGG60354743CGGGATTTCTGTTACTGAATGATGAAAAGCACGGATGTTTTGTCTGCATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTCAGTAACAGAAATCCCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCAGTAACAGAAATCCCG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCAGTAACAGAAATCCCG&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CGGGATTTCTGTTACTGAAT&k=0&no_gap=0&offset=0&limit=46
0.142 | 0.001 | cgi_end;

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