GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:23:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Lactuca serriola Serrassy_T_P2_7970 mRNA sequence.
JO021945.1:1443-1462
CACGTATTCATCTGTTGGTGTTTCTGAATC1443ATTCAGTGCGTCTGTTGCAGAAACTAAAGTGTAATCTTCATCTGTTCCAG
Chrysanthemum makinoi genome assembly, chromosome: 9.
OU343225.1:135626718-135626737
CACATAATCATCATTTGGTGACTCTGAATC135626718ATTCAGTGCGTCTGTTGCAGAGACCAAAGTGTAACCTTTATCTGTTCCCG
Lactuca saligna genome assembly, chromosome: 4.
OX465080.1:29523364-29523383
TACGTATTCATCTGTTGGTGTTTCTGAATC29523364ATTCAGTGCGTCTGTTGCAGAAACTAAAGTGTAATCTTCATCTGTTCCAG
Pholis gunnellus genome assembly, chromosome: 24.
OU342827.1:7104188-7104207
AGAGGACACCGTTCACTGTGTGGCTCCCCG7104188CTGCAACAGACGCACTGAATCATCTGTGACAGGTGGAGTACTGCATGGCT
QGC14B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC14B24, mRNA sequence.
BQ859837.1:453-472
CTGGAACAGATGAAGATTACACTTTAGTTT453CTGCAACAGACGCACTGAATGATTCAGAAACACCAACAGATGAATACGTG
QGG17H24.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG17H24, mRNA sequence.
BQ997816.1:171-190
CTGGAACAGATGAAGATTACACTTTAGTTT171CTGCAACAGACGCACTGAATGATTCAGAAACACCAACAGATGAATACGTG
TSA: Lactuca sativa Letassy_X1_18353 mRNA sequence.
JI575247.1:1558-1577
CTGGAACAGATGAAGATTACACTTTAGTTT1558CTGCAACAGACGCACTGAATGATTCAGAAACACCAACAGATGAATACGTG
Protula sp. h YS-2021 genome assembly, chromosome: 10.
OX457033.1:7751339-7751358
GAGAGTTGCCATGTTAACAAAATCAGGTGT7751339CTGCAACAGACGCACTGAATATACCAATCCACAACACATCGCCGAATAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTCAGTGCGTCTGTTGCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCAGTGCGTCTGTTGCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCAGTGCGTCTGTTGCAG&k=0&no_gap=0&offset=0&limit=50
0.195 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=CTGCAACAGACGCACTGAAT&k=0&no_gap=0&offset=0&limit=47
0.198 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).