GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 13:05:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CccaBa021-K15TV CccABa Cajanus cajan genomic clone CccaBa021-K15, genomic survey sequence.
FI190597.1:723-742
ATGTATACAATCCATATCATATGTATACAT723ATTCCACATCCAAAACAAAGTCACACCACTGTATAATCCATGATGTAACC
CccaBa032-A12TR CccABa Cajanus cajan genomic clone CccaBa032-A12, genomic survey sequence.
FI201295.1:768-787
ATGTATACAATCCATACCATATGTATACAT768ATTCCACATCCAAAACAAAGTCACACCACTGTATAATCCATGATGTAACC
Saururus chinensis isolate CL-2023b chromosome 11.
CP141150.1:28801623-28801642
ATGAAGCCAGTACAAGGAAATTCATCAGTT28801623ATTCCACATCCAAAACAAAGCCTAGTAATTTCAACGTTAGAGCAAATCAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:42024088-42024107
AATTTTCTCAGCAAAATACGAAAAATAACA42024088ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:38758177-38758196
AATTTTCTCAGCAAAATACGAAAAATAACA38758177ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Chrysanthemum makinoi genome assembly, chromosome: 7.
OU343223.1:115460886-115460905
TCTCGGCACTCATTCTTAAAGTGTCCCTTC115460886ATTCCACATCCAAAACAAAGGTGACATGGCCTTCCAGTCCGCTCCTTGTG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:42365323-42365342
AATTTTCTCAGCAAAATACGAAAAATAACA42365323ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:41766331-41766350
AATTTTCTCAGCAAAATACGAAAAATTACA41766331ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:41199432-41199451
AATTTTCTCAGCAAAATACGAAAAATAACA41199432ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:41754567-41754586
AATTTTCTCAGCAAAATACGAAAAATAACA41754567ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:42641298-42641317
AATTTTCTCAGCAAAATACGAAAAATAACA42641298ATTCCACATCCAAAACAAAGTCAACAATTCAACTTTTTTTCCTCATAATC
Endomychus coccineus genome assembly, chromosome: 2.
OY294068.1:166076242-166076261
ATTGGACTTTCGCCAAAGCAATGGGTAGAA166076242ATTCCACATCCAAAACAAAGATGATGGTACACTGGATACAATACCACAAG
Litomosoides sigmodontis genome assembly, chromosome: 5.
OY718808.1:7507942-7507961
TTTCACATCATTTCCTCAAATCACTCCACT7507942ATTCCACATCCAAAACAAAGGAGAAAACACCCTGACGGTTAACTTTAGCA
Ferdinandea cuprea genome assembly, chromosome: 2.
OY754959.1:93662200-93662219
CCATATATGATGAAAAACCTTAAGAAAGTA93662200ATTCCACATCCAAAACAAAGATCGACGAAATGGCTTAGCTCAAGTGTACC
CccaBa046-L8TV CccABa Cajanus cajan genomic clone CccaBa046-L8, genomic survey sequence.
FI228906.1:242-261
GGTTACATCATGGATTATACAGTGGTGTGA242CTTTGTTTTGGATGTGGAATATGTATACATATGGTATGGATTGTATACAT
Saururus chinensis isolate CL-2023b chromosome 2.
CP141141.1:40951768-40951787
TTGATTTGCTTTCATGTTGAAGTTGTAAGG40951768CTTTGTTTTGGATGTGGAATAGCTATTGGCTTTTTTTTTTATTGGCTTCA
Saururus chinensis isolate CL-2023b chromosome 11.
CP141150.1:8255074-8255093
CTCACTTTTCTTATTCTTGGCATGGATTGT8255074CTTTGTTTTGGATGTGGAATCACTACTGACTTTCCTTTCTTTCATCATTG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:4532201-4532220
GATTATGAGGAAAAAAAGTTGAATTGTTGA4532201CTTTGTTTTGGATGTGGAATTGTTATTTTTCCTATTTTGCTGAGAAAATT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:4770486-4770505
GATTATGAGGAAAAAAAGTTGAATTGTTGA4770486CTTTGTTTTGGATGTGGAATTGTTATTTTTCGTATTTTGCTGAGAAAATT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:4666038-4666057
GATTATGAGGAAAAAATGTTGAATTGTTGA4666038CTTTGTTTTGGATGTGGAATTGTTATTTTTCGTATTTTGCTGAGAAAATT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:4417566-4417585
GATTATGAGGAAAAAAAGTTGAATTGTTGA4417566CTTTGTTTTGGATGTGGAATTGTTATTTTTCGTATTTTGCTGAGAAAATT
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:4925527-4925546
TATGAGGGAAAAAAAAAGTTGAATTGTTGA4925527CTTTGTTTTGGATGTGGAATTGTTATTTTTCGTATTTTGCTGAGAAATTT
Falcaria lacertinaria genome assembly, chromosome: 19.
OX602127.1:2084505-2084524
CATTTTTAAGGTACAGACTAGACAGGTGAG2084505CTTTGTTTTGGATGTGGAATGAGCTCTGAGCTGTTGAATGTAAGCATCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTCCACATCCAAAACAAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCCACATCCAAAACAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCCACATCCAAAACAAAG&k=0&no_gap=0&offset=0&limit=50
0.209 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGTTTTGGATGTGGAAT&k=0&no_gap=0&offset=0&limit=36
0.215 | 0.006 | cgi_end;

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