GGGenome | Results

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2025-04-09 16:55:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 1540 from patent US 10006042.
MI846267.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1540 from patent US 10337023.
MO169434.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1540 from patent US 10774340.
MV703181.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1037 from patent US 10858403.
MX112507.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1037 from patent US 11421004.
OO461870.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1037 from patent US 11472853.
OO763990.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1037 from patent US 11485761.
OO823148.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Sequence 1540 from patent US 11499161.
OO870962.1:912-931

CATGCTTGCAACTGGAACTGGAATCGCTCC912ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

UCRCS04_2_023F09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_023_T7_F09, mRNA sequence.
CV886523.1:494-513

CATGCTTGCAACTGGAACTGGAATCGCTCC494ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

UCRCS08_24B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-24B05-D10-1-4.g, mRNA sequence.
CX071811.1:720-739

CATGCTTGCAACTGGAACTGGAATCGCTCC720ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

UCRCS08_3A03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-3A03-B5-1-5.g, mRNA sequence.
CX074543.1:406-425

CATGCTTGCAACTGGAACTGGAATCGCTCC406ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

C01016E09SK Veg1 Citrus clementina cDNA clone C01016E09, mRNA sequence.
CX288079.1:426-445

CATGCTTGCGACTGGAACTGGAATCGCTCC426ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

C05076E09SK DroRLeaf1 Citrus clementina cDNA clone C05076E09, mRNA sequence.
CX295850.1:665-684

CATGCTTGCGACTGGAACTGGAATCGCTCC665ATTCCGTGGATTTTTGTGGAA

UCRCS10_12F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F11-L22-5.g, mRNA sequence.
CX671710.1:675-694

CATGCTTGCAACTGGAACTGGAATCGCTCC675ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

UCRCS10_18E05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-18E05-I10-6.g, mRNA sequence.
CX672674.1:675-694

CATGCTTGCGACTGGAACTGGAATCGCTCC675ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

UCRCS10_22A03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22A03-B6-5.g, mRNA sequence.
CX673330.1:790-809

CATGCTTGCAACTGGAACTGGAATCGCTCC790ATTCCGTGGATTTTTGTGGAAAATGTTCTTTG

UCRCS10_22F08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22F08-L16-5.g, mRNA sequence.
CX673440.1:739-758

CATGCTTGCGACTGGAACTGGAATCGCTCC739ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

Volcani_7_16_B6 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX446171.1:755-774

CATGCTTGCAACTGGAACTGGAATCGCTCC755ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

Volcani_7_22_B11 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX446776.1:340-359

CATGCTTGCAACTGGAACTGGAATCGCTCC340ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C1-100-032-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY652363.1:478-497

CATGCTTGCGACTGGAACTGGAATCGCTCC478ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CS00-C1-102-015-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY666198.1:290-309

GCAGCTTGCGACTGGAACTGGAATCGCTCC290ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CS00-C1-102-053-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY669962.1:544-563

CATGCTTGCAACTGGAACTGGAATCGCTCC544ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAACACGAAAACTACA

CS00-C1-102-009-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY674655.1:305-324

GCAGCTTGCGACTGGAACTGGAATCGCTCC305ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAAAAGTACGAAGACTACA

CS00-C1-401-009-D07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY675349.1:118-137

CATGCTTGCAACTGGAACTGGAATCGCTCC118ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C1-401-011-E10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY675513.1:114-133

CATGCTTGCAACTGGAACTGGAATCGCTCC114ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C1-401-048-C07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
EY678438.1:182-201

CATGCTTGCGACTGGAACTGGAATCGCTCC182ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CS00-C1-650-005-B04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY679888.1:165-184

CATGCTTGCGACTGGAACTGGAATCGCTCC165ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CS00-C1-650-010-B07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY680351.1:533-552

CATGCTTGCGACTGGAACTGGAATCGCTCC533ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CS00-C3-700-039-E04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695714.1:747-766

CATGCTTGCGACTGGAACTGGAATCGCTCC747ATTCCGTGGATTTTTGTGGAAATGTTCTTTGAGAAGTACGAGACACAAGT

CS00-C3-701-014-B03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY702950.1:588-607

CATGCTTGCAACTGGAACTGGAATCGCTCC588ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C3-702-008-B09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY711476.1:255-274

CATGCTTGCAACTGGAACTGGAATCGCTCC255ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C3-702-027-G10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY713164.1:294-313

CATGCTTGCAACTGGAACTGGAATCGCTCC294ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C3-703-072-A10-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY724146.1:152-171

CATGCTTGCAACTGGAACTGGAATCGCTCC152ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CS00-C3-704-048-F11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY731845.1:162-181

CATGCTTGCGACTGGAACTGGAATCGCTCC162ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CS13-C1-001-025-A01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
EY757570.1:278-297

CATGCTTGCGACTGGAACTGGAATCGCTCC278ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

CR05-C1-102-044-F04-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY770088.1:670-689

CATGCTTGCAACTGGAACTGGAATCGCTCC670ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CR05-C1-103-035-B11-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY777464.1:242-261

CATGCTTGCAACTGGAACTGGAATCGCTCC242ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CR05-C1-103-059-A08-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY779657.1:692-711

CATGCTTGCAACTGGAACTGGAATCGCTCC692ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CR05-C1-103-079-B07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY781340.1:531-550

CATGCTTGCAACTGGAACTGGAATCGCTCC531ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAAACTACA

CR05-C1-103-081-E05-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY781816.1:523-542

CATGCTTGCAACTGGAACTGGAATCGCTCC523ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

CR05-C3-702-021-H09-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY809182.1:351-370

GCAGCTTGCAACTGGAACTGGAATCGCTCC351ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

PT11-C1-900-003-C03-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY810052.1:730-749

CATGCTTGCGACTGGAACTGGAATCGCTCC730ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

PT11-C1-900-031-B09-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY812331.1:123-142

CATGCTTGCGACTGGAACTGGAATCGCTCC123ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

PT11-C1-900-055-A01-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY814734.1:284-303

CATGCTTGCGACTGGAACTGGAATCGCTCC284ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCACGAAGACTACA

PT11-C1-900-066-B08-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY815468.1:528-547

CATGCTTGCGACTGGAACTGGAATCGCTCC528ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAACACCAAGACTACA

PT11-C1-900-094-D01-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY818170.1:151-170

CATGCTTGCGACTGGAACTGGAATCGCTCC151ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCACGAAGACTACA

PT11-C1-901-005-H05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY819134.1:751-770

CATGCTTGCGACTGGGACTGGAATCGCTCC751ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAGGACTACA

PT11-C1-901-005-H08-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY819137.1:564-583

CATGCTTGCGACTGGAACTGGAATCGCTCC564ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

PT11-C1-901-012-B01-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY820069.1:332-351

CATGCTTGCGACTGGAACTGGAATCGCTCC332ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

PT11-C1-901-031-G05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY821545.1:236-255

CATGCTTGCGACTGGAACTGGAATCGCTCC236ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

PT11-C1-901-041-D12-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY822147.1:745-764

CATGCTTGCGACTGGAACTGGGATCGCTCC745ATTCCGTGGATTTTTGTGGAAATGCTCTTTGAAAACATGAAGACTACAGT

PT11-C1-901-081-G01-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY825465.1:305-324

CATGCTTGCGACTGGAACTGGAATCGCTCC305ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

PT11-C1-901-084-E04-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY825893.1:750-769

CATGCTTGCGACTGGAACTGGAATCGCTCC750ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAACATGAAGACTACA

PT11-C1-901-098-F06-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY827421.1:327-346

CATGCTTGCGACTGGAACTGGAATCGCTCC327ATTCCGTGGATTTTTGTGGAAAATGCTCTTTGAGAAGCATGAAGACTACA

LT33-C1-003-002-F01-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY878609.1:486-505

CATGCTTGCAACTGGAACTGGAATCGCTCC486ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGACAACCCCCCCCGACTAC

LT33-C1-003-057-F12-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY881611.1:149-168

CATGCTTGCAACTGGAACTGGAATCGCTCC149ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGCACGAAGACTACA

895 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 1046 5', mRNA sequence.
GO242247.1:299-318

CATGCTTGCGACTGGAACTGGAATCGCTCC299ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

QM0AAC3CF03RM1 CCH3 Citrus clementina genomic clone CCH3029L05, genomic survey sequence.
ET082454.1:401-420

GCAGCTTGCGACTGGAACTGGAATCGCTCC401ATTCCGTGGATTTTTGTGGAAAATGTTCTTTGAGAAGTACGAAGACTACA

Euphrasia confusa genome assembly, chromosome: 2.
OX940950.1:1422167-1422186

GATTTTAATGGATTTTTTTGGATTTTTAAA1422167ATTCCGTGGATTTTTGTGGATTTTCTAAATCCACGGAGTCTACAAAGAGT

Euphrasia confusa genome assembly, chromosome: 7.
OX940955.1:560173-560192

GATTTTAATGGATTTTTTAGGATTTTTAAA560173ATTCCGTGGATTTTTGTGGATTTTCTAAATCTACGGAGTCTAGGAAGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
2.804 | 2.796 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCCGTGGATTTTTGTGGA&k=0&no_gap=0&offset=0&limit=50
2.875 | 0.071 | search_minus_done; http://172.18.8.135:50400/match?q=TCCACAAAAATCCACGGAAT&k=0&no_gap=0&offset=0&limit=0
2.875 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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