GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:25:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHWJ07TF BO_2_3_KB Brassica oleracea genomic clone BOHWJ07, genomic survey sequence.
BH669593.1:452-471
TTTCTTTTTTTTTAATATTATACTATATTC452ATTCGACCCGTAAACCAGGAATTTGGTTCTAATTACAAACCGTCTCGTAC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:21862067-21862086
TTTCTTTTTTTTTAATATTATACTATATTC21862067ATTCGACCCGTAAACCAGGAATTTGGTTCTAATTACAAACCGTCTCGTAC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:23097297-23097316
TTTCTTTTTTTTTAATATTATACTATATTC23097297ATTCGACCCGTAAACCAGGAATTTGGTTCTAATTACAAACCGTCTCGTAC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:45181414-45181433
GTACGAGACGGTTTGTAATTAGAACCAAAT45181414TCCTGGTTTACGGGTCGAATGAATATAGTATAATATTAAAAAAAAAGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTCGACCCGTAAACCAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCGACCCGTAAACCAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.118 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCGACCCGTAAACCAGGA&k=0&no_gap=0&offset=0&limit=50
0.137 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTGGTTTACGGGTCGAAT&k=0&no_gap=0&offset=0&limit=47
0.138 | 0.001 | cgi_end;

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