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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 01:44:13, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Muscadinia rotundifolia cv. Regale BAC end sequence.
FO832748.1:134-155
TGAATGTGGTTAAAGAGCCAGTAACGTACG134ATTCGTCTTTATGCCCATTGTTCGCTTCTCTGCATCTAGACTTGAAACTAGA
Muscadinia rotundifolia cv. Regale BAC end sequence.
FO887423.1:134-155
TGAATATGGTTAAAGAGCCAGTAACGTACG134ATTCGTCTTTATGCCCATTGTTCGCTTCTCTGCATCTAGACTTGAAACTAGA
Vitis vinifera, whole genome shotgun sequence, contig VV78X098781.4, clone ENTAV 115.
AM470837.1:32041-32062
TGAATGTGGTTAAAGAGCCAATAACGTACG32041ATTCGTCTTTATGCCCATTGTTCGCTTCTTTGCATCTAGACTTGAAACTAGA
Vitis vinifera cv. PN40024, annotated scaffold_500.assembly12x.
FN596294.1:369-390
TGAATGTGGTTAAAGAGCCAATAACGTACG369ATTCGTCTTTATGCCCATTGTTCGCTTCTTTGCATCTAGACTTGAAACTAGA
VMC8D11 VMC library Vitis vinifera STS genomic, sequence tagged site.
BV722709.1:124-145
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG124AACAATGGGCATAAAGACGAATCGT
Vitis rotundifolia cultivar Noble chromosome 20.
CP092945.1:1237142-1237163
TCTAGTTTCAAGTCTAGATGCAGAGAAGCG1237142AACAATGGGCATAAAGACGAATCGTACGTTACTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Pinot Noir 40024 chromosome 7.
CP126654.1:23096541-23096562
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23096541AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128333.1:23637876-23637897
TCTAGTTTCAAGTCTAGATACAAAGAAGCG23637876AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128352.1:24296767-24296788
TCTAGTTTCAAGTCTAGATACAAAGAAGCG24296767AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Black Monukka isolate seedless chromosome 07.
CP140991.1:21469893-21469914
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG21469893AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Black Monukka isolate seedless chromosome 07.
CP141010.1:21606784-21606805
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG21606784AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Thompson Seedless isolate seedless chromosome 07.
CP142471.2:22421513-22421534
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22421513AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Thompson Seedless isolate seedless chromosome 07.
CP142490.2:21464461-21464482
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG21464461AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis retordii isolate mmpt chromosome 7.
CP149593.1:26369299-26369320
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG26369299AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis retordii isolate mmpt chromosome 7.
CP149612.1:24570404-24570425
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG24570404AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera x Vitis labrusca cultivar Shine Muscat chromosome 07.
CP161580.1:21834901-21834922
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG21834901AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera x Vitis labrusca cultivar Shine Muscat chromosome 07.
CP161599.1:23171034-23171055
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23171034AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Pinot Noir chromosome 07.
CP161618.1:24029033-24029054
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG24029033AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Pinot Noir chromosome 07.
CP161637.1:23097279-23097300
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23097279AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Muscat Hamburg chromosome 07.
CP161656.1:22186318-22186339
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22186318AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Muscat Hamburg chromosome 07.
CP161675.1:23004013-23004034
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23004013AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Manicure Finger chromosome 07.
CP161694.1:23010222-23010243
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23010222AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Manicure Finger chromosome 07.
CP161713.1:21925480-21925501
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG21925480AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Hongmunage chromosome 07.
CP161732.1:26466103-26466124
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG26466103AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Hongmunage chromosome 07.
CP161751.1:22804727-22804748
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22804727AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Baimunage chromosome 07.
CP161770.1:22162560-22162581
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22162560AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Baimunage chromosome 07.
CP161789.1:22709488-22709509
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22709488AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera genome assembly, chromosome: 7.
OZ210965.1:23509577-23509598
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23509577AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera genome assembly, chromosome: 07.
OZ210984.1:24102190-24102211
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG24102190AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis rotundifolia genome assembly, chromosome: 20.
OZ211420.1:1255915-1255936
TCTAGTTTCAAGTCTAGATGCAGAGAAGCG1255915AACAATGGGCATAAAGACGAATCGTACGTTACTGGCTCTTTAACCACATTCA
Vitis pseudoreticulata genome assembly, chromosome: 07.
OZ211427.1:25265568-25265589
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG25265568AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis cinerea var. helleri x Vitis riparia genome assembly, chromosome: 07.
OZ211446.1:23055856-23055877
TCTAGTTTCAAGTCTAGATACAAAGAAGCG23055856AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera genome assembly, chromosome: 07.
OZ211465.1:23089706-23089727
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23089706AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis rotundifolia genome assembly, chromosome: 20.
OZ211496.1:1282901-1282922
TCTAGTTTCAAGTCTAGATGCAGAGAAGCG1282901AACAATGGGCATAAAGACGAATCGTACGTTACTGGCTCTTTAACCACATTCA
Vitis pseudoreticulata genome assembly, chromosome: 07.
OZ211504.1:25230279-25230300
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG25230279AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis cinerea var. helleri x Vitis vinifera genome assembly, chromosome: 07.
OZ211522.1:22229426-22229447
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22229426AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis cinerea var. helleri x Vitis vinifera genome assembly, chromosome: 07.
OZ211542.1:22731198-22731219
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG22731198AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis vinifera genome assembly, chromosome: 07.
OZ211561.1:23992739-23992760
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23992739AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis cinerea var. helleri x Vitis riparia genome assembly, chromosome: 07.
OZ211580.1:24288671-24288692
TCTAGTTTCAAGTCTAGATACAAAGAAGCG24288671AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis cinerea var. helleri x Vitis riparia genome assembly, chromosome: 07.
OZ211599.1:24732124-24732145
TCTAGTTTCAAGTCTAGATACAAAGAAGCG24732124AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis cinerea var. helleri x Vitis riparia genome assembly, chromosome: 07.
OZ211650.1:24217164-24217185
TCTAGTTTCAAGTCTAGATACAAAGAAGCG24217164AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTCGTCTTTATGCCCATTGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCGTCTTTATGCCCATTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.219 | 0.210 | search_plus_done; http://172.18.8.135:50800/match?q=ATTCGTCTTTATGCCCATTGTT&k=0&no_gap=0&offset=0&limit=50
0.313 | 0.094 | search_minus_done; http://172.18.8.135:50800/match?q=AACAATGGGCATAAAGACGAAT&k=0&no_gap=0&offset=0&limit=46
0.339 | 0.025 | cgi_end;

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