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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-16 00:21:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Muscadinia rotundifolia cv. Regale BAC end sequence.
FO832748.1:134-155
TGAATGTGGTTAAAGAGCCAGTAACGTACG134ATTCGTCTTTATGCCCATTGTTCGCTTCTCTGCATCTAGACTTGAAACTAGA
Muscadinia rotundifolia cv. Regale BAC end sequence.
FO887423.1:134-155
TGAATATGGTTAAAGAGCCAGTAACGTACG134ATTCGTCTTTATGCCCATTGTTCGCTTCTCTGCATCTAGACTTGAAACTAGA
Vitis vinifera, whole genome shotgun sequence, contig VV78X098781.4, clone ENTAV 115.
AM470837.1:32041-32062
TGAATGTGGTTAAAGAGCCAATAACGTACG32041ATTCGTCTTTATGCCCATTGTTCGCTTCTTTGCATCTAGACTTGAAACTAGA
Vitis vinifera cv. PN40024, annotated scaffold_500.assembly12x.
FN596294.1:369-390
TGAATGTGGTTAAAGAGCCAATAACGTACG369ATTCGTCTTTATGCCCATTGTTCGCTTCTTTGCATCTAGACTTGAAACTAGA
VMC8D11 VMC library Vitis vinifera STS genomic, sequence tagged site.
BV722709.1:124-145
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG124AACAATGGGCATAAAGACGAATCGT
Vitis rotundifolia cultivar Noble chromosome 20.
CP092945.1:1237142-1237163
TCTAGTTTCAAGTCTAGATGCAGAGAAGCG1237142AACAATGGGCATAAAGACGAATCGTACGTTACTGGCTCTTTAACCACATTCA
Vitis vinifera cultivar Pinot Noir 40024 chromosome 7.
CP126654.1:23096541-23096562
TCTAGTTTCAAGTCTAGATGCAAAGAAGCG23096541AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128333.1:23637876-23637897
TCTAGTTTCAAGTCTAGATACAAAGAAGCG23637876AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128352.1:24296767-24296788
TCTAGTTTCAAGTCTAGATACAAAGAAGCG24296767AACAATGGGCATAAAGACGAATCGTACGTTATTGGCTCTTTAACCACATTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTCGTCTTTATGCCCATTGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCGTCTTTATGCCCATTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.404 | 0.395 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCGTCTTTATGCCCATTGTT&k=0&no_gap=0&offset=0&limit=50
0.511 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=AACAATGGGCATAAAGACGAAT&k=0&no_gap=0&offset=0&limit=46
0.514 | 0.003 | cgi_end;

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