GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 09:03:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Canis lupus genome assembly, chromosome: 25.
HG994404.1:20402096-20402113
GGGGTTTGTAGAGGCAGGGAGCGTGTGAGT20402096ATTGAATGGGGTTGGTGTGAGGGCAGGCAGGGGGAGGAGTTTAAATGC
Martes martes genome assembly, chromosome: 3.
OY734065.1:166605282-166605299
GTAGCATAAGTAATTGCACCAAAGCATTAA166605282ATTGAATGGGGTTGGTGTCAGAATGGAGACAGATGGAGCAGGTACGGA
Vespertilio murinus genome assembly, chromosome: 14.
OZ004718.1:45570650-45570667
ATCTATGAAATCTGACAGATGAAAGGACTT45570650ATTGAATGGGGTTGGTGTGAAGACTGGAAGAGTTAAAATGTATAAAAT
Pollachius pollachius genome assembly, chromosome: 8.
OX465131.1:22776735-22776752
GGCGCACCGCGTTTTTTCCCGGGCGAAAGC22776735ATTGAATGGGGTTGGTGTGGGTGGGGTAGGGTCTGGCGTTGAATACAC
Electrona antarctica genome assembly, chromosome: 5.
OX578250.1:17881342-17881359
GCAAACATGTCCAAGATGAACCTAAATAGG17881342ATTGAATGGGGTTGGTGTTTCTAGTATTGTGACGGACCGAAATGGTCC
Nesoenas mayeri genome assembly, chromosome: 2.
OY720057.1:63947961-63947978
TCTACATAGAACAAATATTCCAGAGCCACA63947961ATTGAATGGGGTTGGTGTTCTTCGGCCTTATTTTTCTGCTTCCAAGAT
Protomyctophum bolini genome assembly, chromosome: 13.
OZ001278.1:33889295-33889312
TTCATTGCATGACAAAGTATGTAGGGCTTA33889295ATTGAATGGGGTTGGTGTGTGGTAAGGGTAATGGATGGGTTTATGGGT
MAG: Simkaniaceae bacterium isolate M30B1 chromosome, complete genome.
CP073763.1:757845-757862
ATTTCTTTGAGAGAAGAGAGGCGAGTCGAT757845ATTGAATGGGGTTGGTGTCCTGATACTCATCGATCATGATGTAGCGAA
Vicia faba genome assembly, chromosome: 1L.
OX451736.1:471423481-471423498
TAGGTTTAGTAGAAAATAAGAAAAAAACCA471423481ATTGAATGGGGTTGGTGTTGAACCCACGCCCTTCCCTTCACAGGATAC
Salicornia ramosissima genome assembly, chromosome: 8.
OX596239.1:43568280-43568297
TGAGTTTGTTGACTGTAATAATACAACAGC43568280ATTGAATGGGGTTGGTGTGGGTAGGTTGGGGTTGGCTAAGGTGAATCA
Theobroma cacao genome assembly, chromosome: 1.
OY284458.1:35697846-35697863
ATGATTCATGTTATGTGTCAAGTTCACATC35697846ATTGAATGGGGTTGGTGTTATTAAAGAAAGCTTTTCTTTTTCTTGGCC
Hibiscus tridactylites genome assembly, chromosome: 19.
OY288283.1:26863375-26863392
GGCATGATAACATTTATGACACATGTAGGC26863375ATTGAATGGGGTTGGTGTGGGTTGACATTTTCACCATCCGTGTATTAG
Pyrus communis genome assembly, chromosome: 12.
OY757079.1:26252113-26252130
GAAAGAAAGAAAGATTATGTCTTGGTAAAG26252113ATTGAATGGGGTTGGTGTCAGGTTGAATGGGGTTGGAGGTGTCAAGCT
Mamestra brassicae genome assembly, chromosome: 3.
LR990990.1:7645486-7645503
TTGAGTGTTGATATATGCAGACATAGGTAT7645486ATTGAATGGGGTTGGTGTTGCTCTTATTATTATCGATGTATGACAATT
Bibio marci genome assembly, chromosome: 5.
OU343118.1:6666849-6666866
CTATTTGTATTTTAAATTAATTATTATATA6666849ATTGAATGGGGTTGGTGTCGTCTCATATTGATGGATGATTGTGTTAAC
Campaea margaritaria genome assembly, chromosome: 6.
OU538794.1:6355712-6355729
AACTTTATTTATTGGAAACTAAGACAGAAC6355712ATTGAATGGGGTTGGTGTGAAGGGAAGTGTCGGAAGCAGGTTATCGGC
Agrochola macilenta genome assembly, chromosome: 30.
OU753582.1:2402259-2402276
TAGCGGCAGAAATCCTTTTAAGGTTTTAGA2402259ATTGAATGGGGTTGGTGTATTGACGTTCCGGGCGTTAATGTTGCAAGC
Chironomus riparius genome assembly, chromosome: 4.
OU895880.1:10974315-10974332
GTTGAGTGAGTTTTGGTGGAACTGATTTAT10974315ATTGAATGGGGTTGGTGTGTCTCTCGTGGGTTCAATTTAACTCTACTA
Leucozona laternaria genome assembly, chromosome: 4.
OW026369.1:30982510-30982527
GTTATTGTCATAAAAATATACTAAAAATGA30982510ATTGAATGGGGTTGGTGTTAGATCGTAAAATTCGTTTGTGTTTGAAAT
Rhingia campestris genome assembly, chromosome: 4.
OW052185.1:107593490-107593507
ATTGGATGGCTTTTAGATGGTCCAGAACCG107593490ATTGAATGGGGTTGGTGTTGTGTTTCTTGCATGATTGTACATATAGTT
Phyto melanocephala genome assembly, chromosome: 1.
OW799233.1:46083401-46083418
TTTTTTTATTTTTTTTATTTTGCGATTGCA46083401ATTGAATGGGGTTGGTGTACCACTCAGGCAGTTAATCTTTTTTTTTTT
Alentia gelatinosa genome assembly, chromosome: 10.
OX465588.1:39652816-39652833
ACCGAGAAAACAAAACACTCAATGTTGACC39652816ATTGAATGGGGTTGGTGTATATTGGGGCAGTTTGAACCACTTTGAAGC
Sepia lycidas genome assembly, chromosome: 10.
OZ010580.1:109868921-109868938
ATAAAAATATTTCAAAAATTTAACTAACAT109868921ATTGAATGGGGTTGGTGTAAAAGTAAAATGTGGCACTACTCTGTGAGG
Maratus speciosus genome assembly, chromosome: 9.
OZ010795.1:568024789-568024806
TCGTTGATCTTGATAGTGCAGTTCAAAAAA568024789ATTGAATGGGGTTGGTGTTGTGCAAGATAGCGTTTTCAAGAAAGAACA
Canis lupus familiaris breed Labrador retriever chromosome 25a.
CP050568.1:31188565-31188582
GCATTTAAACTCCTCCCCCTGCCTGCCCTC31188565ACACCAACCCCATTCAATACTCACACGCTCCCTGCCTCTACAAACCCC
Canis lupus familiaris breed Labrador retriever chromosome 25b.
CP050633.1:31170946-31170963
GCATTTAAACTCCTCCCCCTGCCTGCCCTC31170946ACACCAACCCCATTCAATACTCACACGCTCCCTGCCTCTACAAACCCC
Streptopelia turtur genome assembly, chromosome: 2.
LR594552.1:103511365-103511382
AATGCAGAAGAAGAAAAATTAGGCCGAGGA103511365ACACCAACCCCATTCAATTGTGGCTCTGGAATATTTGTTCTATGTAGA
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:23764827-23764844
ATGAGATCCGAAGAAGAGGTTGGAAAATTC23764827ACACCAACCCCATTCAATAAGTCGGGATCTTAATGGTTCAAGAGTTCT
Papaver somniferum cultivar Roxanne chromosome 11.
CP048212.1:95976286-95976303
AATGTCAGGAAACCTTGTGTTACATTCCAC95976286ACACCAACCCCATTCAATCTCTTGAACAGCTTTTCTGAACCCTTGTGC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:22831501-22831518
ATGAGATCCGAAGAAGAGGTTGGAAAATTC22831501ACACCAACCCCATTCAATAAGTCGGGATCTTAATGGTTCAAGAGTTCT
Theobroma cacao isolate Sca6 chromosome 1.
CP139290.1:3484253-3484270
GGCCAAGAAAAAGAAAAGCTTTCTTTAATA3484253ACACCAACCCCATTCAATGATGTGAACTTGACACATAACATGAATCAT
Allium cepa genome assembly, chromosome: 5.
LR994633.1:146599016-146599033
AACAAAGTATTATACCAAGAACAGAAAATT146599016ACACCAACCCCATTCAATTTTTTTTCAAAGATCGTTTTGCTATTGTTG
Theobroma cacao genome assembly, chromosome: I.
LT594788.1:3499812-3499829
GGCCAAGAAAAAGAAAAGCTTTCTTTAATA3499812ACACCAACCCCATTCAATGATGTGAACTTGACACATAACATGAATCAT
Theobroma cacao genome assembly, chromosome: 1.
OY284438.1:3545198-3545215
GGCCAAGAAAAAGAAAAGCTTTCTTTAATA3545198ACACCAACCCCATTCAATGATGTGAACTTGACACATAACATGAATCAT
Theobroma cacao genome assembly, chromosome: 1.
OY284448.1:3545472-3545489
GGCCAAGAAAAAGAAAAGCTTTCTTTAATA3545472ACACCAACCCCATTCAATGATGTGAACTTGACACATAACATGAATCAT
Hibiscus tridactylites genome assembly, chromosome: 17.
OY288281.1:68337153-68337170
CTAATACACGGATGGTGAAAATGTCAACCC68337153ACACCAACCCCATTCAATGCCTACATGTGTCATAAATGTTATCATGCC
Acronicta aceris genome assembly, chromosome: 4.
OU342761.1:17588440-17588457
AATTTTCACCATATTTTCGAGACTAGTCAC17588440ACACCAACCCCATTCAATGTCTCAGAATTTCACTACATACAATAATTT
Eristalis arbustorum genome assembly, chromosome: 4.
OU744319.1:3274833-3274850
ACTCAAGTTTCATTTCAAGTATCCCCCCAA3274833ACACCAACCCCATTCAATTGTCACCAAAATGCCCCGATCACATTCCTC
Megachile ligniseca genome assembly, chromosome: 7.
OX243783.1:5391877-5391894
TGCATTTCTACTACAGAAAATTGCATAAAT5391877ACACCAACCCCATTCAATTATCTGAGCTTTTGATAAGAAAGTTAAATG
Rhingia rostrata genome assembly, chromosome: 4.
OX463758.1:9886992-9887009
AACTATATGTACAATCATGCAAGAAACACA9886992ACACCAACCCCATTCAATCGGTTCTGGACCATCTGAAAGCCATCGAAC
Maratus michaelseni genome assembly, chromosome: 10.
OZ007596.1:262551100-262551117
CTGCATCTGTCTTAGACTTATCCGGCTGTG262551100ACACCAACCCCATTCAATTAATCTAACTTCAGAAAAACCAGTTAAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTGAATGGGGTTGGTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTGAATGGGGTTGGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.250 | 0.241 | search_plus_done; http://172.18.8.135:50400/match?q=ATTGAATGGGGTTGGTGT&k=0&no_gap=0&offset=0&limit=50
0.389 | 0.139 | search_minus_done; http://172.18.8.135:50400/match?q=ACACCAACCCCATTCAAT&k=0&no_gap=0&offset=0&limit=26
0.401 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).