GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 17:04:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense DNA, clone:RC0174f.ab1.
DE244903.1:512-531
CTCAAGAAGATACCATCATGTCTGATGCAA512CTCCTGATCCACCAAGCAATGTACCCCAGAGAGATACTGTTTAAGAGGTA
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737410.1:298647818-298647837
CTTCAAGAGGCTCCTCTAGACGTTGAGGCG298647818CTCCTGATCCACCAAGCAATGCACTTCCGTGCAAGCTCCTGCAGTGTACT
Hordeum bulbosum genome assembly, chromosome: 2H_2.
OY737417.1:300229219-300229238
CTTCAAGAGGCTCCTCTAGACGTTGAGGCG300229219CTCCTGATCCACCAAGCAATGCACTTCCGTGCAAGCTCCTGCAGTGTACT
Hordeum bulbosum genome assembly, chromosome: 2H_2.
OY737435.1:286752484-286752503
CTTCAAGAGGCTCCTCTAGACGTTGAGGCG286752484CTCCTGATCCACCAAGCAATGCACTTCCGTGCAAGCTCCTGCAGTGTACT
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737475.1:273967043-273967062
CTTCTAGAGGCTCCTCTAGACGTTGAGGCG273967043CTCCTGATCCACCAAGCAATGCACTTCCGTGCAAGCTCCTGCAGTGTACT
Hordeum bulbosum genome assembly, chromosome: 2H_2.
OY737497.1:272549211-272549230
CTTCTAGAGGCTCCTCTAGACGTTGAGGCG272549211CTCCTGATCCACCAAGCAATGCACTTCCGTGCAAGCTCCTGCAGTGTACT
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737881.1:277730568-277730587
CTTCTAGAGGCTCCTCTAGACGTTGAGGCG277730568CTCCTGATCCACCAAGCAATGCACTTCCGTGCAAGCTCCTGCAGTGTACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTGCTTGGTGGATCAGGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTGCTTGGTGGATCAGGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.089 | 0.080 | search_plus_done; http://172.18.8.135:50400/match?q=ATTGCTTGGTGGATCAGGAG&k=0&no_gap=0&offset=0&limit=50
0.120 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCTGATCCACCAAGCAAT&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.005 | cgi_end;

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