GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 23:12:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig37582 mRNA sequence.
JW087826.1:660-679
TTTTGATGGTTGACATCTATGACACTTCAC660ATTGTCAGAGTCGGGAAGCAGTGATTGGGAGAAGCCATGATACAAG
Capsicum chinense DNA, clone: 189D23.
AB442178.1:110-129
ATTTGATGGTTGACATCTATGATACTTCAC110ATTGTCAGAGTCGGGAAGCAGCGATTGCGAGAAGCCAGGCTACAAGCAGT
Capsicum frutescens clone PEPBAC38, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.
DQ913812.1:118057-118076
TTGATGGTTGACATGTATGATATACTTCAC118057ATTGTCAGAGTCGGGAAGCAGCGATTGCGAGAAGCCAGGCTACAAGCAGT
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:199943102-199943121
TTTTGATGGTTGACATCTATGACACTTCAC199943102ATTGTCAGAGTCGGGAAGCAGTGATTGGGAGAAGCCATGATACAAGCAGT
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:274412108-274412127
TTTTGATGGTTGAAATCTATGATACTTCAC274412108ATTGTCAGAGTCGGGAAGCAACGATTGCGAGAAGCCAGGCTACAAGCAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:15612144-15612163
TTCTGAAGGTTGGCATCTATAATACTTCAC15612144ATTGTCAGAGTCGGGAAGCAGCGATTGCGAGAAGCCAGGATAGCAGTTGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:16118431-16118450
TTTTGATGGTTGGCATCTATGATACTTCAC16118431ATTGTCAGAGTCGGGAAGCAGCAATTGAGAGAAGCCAGGATACAAGCAGT
Capsicum frutescens clone PEPBAC69, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
DQ913815.1:78615-78634
ACTGCTTGTAGCCTGGCTTCTCGCAATCGC78615TGCTTCCCGACTCTGACAATGTGAAGTATCATAGATGTCAACCATCAAAA
Capsicum frutescens clone PEPBAC69, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
DQ913815.1:85142-85161
ACTGCTTGTAGCCTGGCTTCTCGCAATCGC85142TGCTTCCCGACTCTGACAATGTGAAGTATATCATACATGTCAACCATCAA
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:261719295-261719314
ACTGCTTGTATCCTGGCTTCTCTCAATTGC261719295TGCTTCCCGACTCTGACAATGTGAAGTATCATAGATGCCAACCATCAAAA
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:262221949-262221968
TCAACTGCTATCCTGGCTTCTCGCAATCGC262221949TGCTTCCCGACTCTGACAATGTGAAGTATTATAGATGCCAACCTTCAGAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:2976653-2976672
ACTGCTTGTAGCCTGGCTTCTCGCAATCGT2976653TGCTTCCCGACTCTGACAATGTGAAGTATCATAGATTTCAACCATCAAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:53072811-53072830
ACTGCTTGTATCATGGCTTCTCCCAATCAC53072811TGCTTCCCGACTCTGACAATGTGAAGTGTCATAGATGTCAACCATCAAAA
Capsicum frutescens clone BAC PEPBAC158K24, complete sequence.
FJ597540.1:2321-2340
ACTGCTTGTAGCCTGGCTTCTCGCAATCGC2321TGCTTCCCGACTCTGACAATGTGAAGTATATCATACATGTCAACCATCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTGTCAGAGTCGGGAAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTGTCAGAGTCGGGAAGCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.110 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=ATTGTCAGAGTCGGGAAGCA&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTTCCCGACTCTGACAAT&k=0&no_gap=0&offset=0&limit=43
0.137 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).