GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:48:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

WS03922.C21_H23 SS-B-24 Picea sitchensis cDNA clone WS03922_H23 3', mRNA sequence.
ES663853.1:19-38
ATTTGCCAGCCCATGCTG19ATTTATCTCGTTGCTTTCTAATGGGCGATAGCGCAGGCGCGAACATAGTT
GQ03705.B7_J18 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03705_J18 5', mRNA sequence.
EX416617.1:608-627
ACGGTAAGGCCCATTTGCCGGCCCATGCTG608ATTTATCTCGTTGCTTTCTAATGAGTGATAGCGCAGGCGGGAACATAGTT
GQ03903.B7_A13 GQ039 - Stem - Dormant Picea glauca cDNA clone GQ03903_A13 5', mRNA sequence.
EX429656.1:614-633
ACGGTAAGGCCTATTTGCCGGCCCATGCTG614ATTTATCTCGTTGCTTTCTAATGGGCGATAGCGCAGGCGCGAACATAGTT
WS0442.C21_F02 SS-BD-29 Picea sitchensis cDNA clone WS0442_F02 5', mRNA sequence.
GH280926.1:656-675
ATGGTAAAGCCCATTTGCCAGCCCATGCTG656ATTTATCTCGTTGCTTTCTAATGGGCGATAGCGCAGGCGCGAACATAGTT
WS0442.CR_F02 SS-BD-29 Picea sitchensis cDNA clone WS0442_F02 3', mRNA sequence.
GH281249.1:157-176
ATGGTAAAGCCCATTTGCCAGCCCATGCTG157ATTTATCTCGTTGCTTTCTAATGGGCGATAGCGCAGGCGCGAACATAGTT
TSA: Larix kaempferi PEMSHF3RN.Lakaproemb mRNA sequence.
JR183157.1:17-36
CTGCCGGGCCATGCAG17ATTTATCTCGTTGCTTTCTAATGGGCGACAGCGCAGGCGCCAACATAGTT
Picea glauca clone GQ03705_J18 mRNA sequence.
BT115756.1:608-627
ACGGTAAGGCCCATTTGCCGGCCCATGCTG608ATTTATCTCGTTGCTTTCTAATGAGTGATAGCGCAGGCGGGAACATAGTT
Picea glauca clone GQ03903_A13 mRNA sequence.
BT117552.1:614-633
ACGGTAAGGCCTATTTGCCGGCCCATGCTG614ATTTATCTCGTTGCTTTCTAATGGGCGATAGCGCAGGCGCGAACATAGTT
Picea sitchensis clone WS0442_F02 unknown mRNA.
BT122257.1:656-675
ATGGTAAAGCCCATTTGCCAGCCCATGCTG656ATTTATCTCGTTGCTTTCTAATGGGCGATAGCGCAGGCGCGAACATAGTT
Hermetia illucens genome assembly, chromosome: 1.
LR899009.1:12306664-12306683
CGGAACTCGTTTCAGCCATGGAGAAGATAC12306664ATTTATCTCGTTGCTTTCTAATCAGCTTCTCTGTCCAAATATTATATATT
WS00742.C21_D16 WS-PS-N-A-8 Picea glauca cDNA clone WS00742_D16 3, mRNA sequence.
DR576013.1:612-631
AACTATGTTCGCGCCTGCGCTATCGCCCAT612TAGAAAGCAACGAGATAAATCAGC
GQ03903.SP6.r_A13 GQ039 - Stem - Dormant Picea glauca cDNA clone GQ03903_A13 3', mRNA sequence.
GO368994.1:630-649
AACTATGTTCGCGCCTGCGCTATCGCCCAT630TAGAAAGCAACGAGATAAATCAGCATGGGCCGGCAAATAGGCCTTACCGT
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:17747028-17747047
CTAGATAACACCACATAGTCTACATGCTTC17747028TAGAAAGCAACGAGATAAATATAATAATTAGAGAAGGGGAAAATGAGTTG
Andrena chrysosceles genome assembly, chromosome: 2.
OY979767.1:48459487-48459506
ACGATATTTTGGGATCCAATATCTCTGTAA48459487TAGAAAGCAACGAGATAAATTGAGACCCCCGTGCAGGGTCGCTATGTGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTTATCTCGTTGCTTTCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTATCTCGTTGCTTTCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.496 | 0.488 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTATCTCGTTGCTTTCTA&k=0&no_gap=0&offset=0&limit=50
0.729 | 0.233 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAAAGCAACGAGATAAAT&k=0&no_gap=0&offset=0&limit=40
0.732 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).