GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 00:19:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST692341 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBAJ60 5' end, mRNA sequence.
CF814959.1:177-196
TTTCCAAATATTTCTCGCGATTTGGCCCAT177ATTTGGCAAGTTTTCATCGCATTGCATGTCGGCACCAAATTCATTCCCTC
G872P59RD17.T0 C. posadasii Silveira, MYCELIAL_NORMALIZED Coccidioides posadasii cDNA, mRNA sequence.
GH402170.1:366-385
TTTCCAAATATTTCTCGCGATTTGGCCCAT366ATTTGGCAAGTTTTCATCGCATTGCATGTCGGCACCAAATTCATTCCCTC
Coccidioides posadasii str. Silveira chromosome 2.
CP075069.1:7255400-7255419
TTTCCAAATATTTCTCGCGATTTGGCCCAT7255400ATTTGGCAAGTTTTCATCGCATTGCATGTCGGCACCAAATTCATTCCCTC
Platycnemis pennipes genome assembly, chromosome: 6.
OW121852.1:83354701-83354720
ATGAAAATCAAGATAAACTCATTGCTGGTA83354701ATTTGGCAAGTTTTCATCGCTTCATTTTGAGAATAATAAATAGATAAGAA
EST692340 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBAJ60 3' end, mRNA sequence.
CF814958.1:673-692
GAGGGAATGAATTTGGTGCCGACATGCAAT673GCGATGAAAACTTGCCAAATATGGGCCAAATCGCGAGAAATATTTGG
EST696789 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBA49 5' end, mRNA sequence.
CF819407.1:676-695
GAGGGAATGAATTTGGTGCCGACATGCAAT676GCGATGAAAACTTGCCAAATATGGGCCAAATCGCG
EST785480 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBG46 3' end, mRNA sequence.
CO015098.1:29-48
GGGAATGAATTTGGTGCCGACATGCAAT29GCGATGAAAACTTGCCAAATATGGGCCAAATCGCGAGAAAATATTTGGAA
Dianthus caryophyllus mRNA, clone: CES05M13, 5' end sequence.
FY384282.1:260-279
GAATAATAAAGCAGGTGGAGTATTATTTCA260GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CES12G23, 5' end sequence.
FY386801.1:110-129
GAATAATAAAGCAGGTGGAGTATTATTTCA110GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CES23L15, 5' end sequence.
FY391056.1:235-254
AAATAATAAAGCAGGTGGAGTATTACTTCA235GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CFES03B09, 5' end sequence.
FY394959.1:247-266
AAATAATAAAGCAGGTGGAGTATTACTTCA247GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CFES03G18, 5' end sequence.
FY395087.1:247-266
AAATAATAAAGCAGGTGGAGTATTACTTCA247GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CFES11I09, 5' end sequence.
FY398147.1:248-267
GAATAATAAAGCAGGTGGAGTATTATTTCA248GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CFES11I11, 5' end sequence.
FY398149.1:248-267
GAATAATAAAGCAGGTGGAGTATTATTTCA248GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Dianthus caryophyllus mRNA, clone: CFES23P17, 5' end sequence.
FY402808.1:253-272
AAATAATAAAGCAGGTGGAGTATTACTTCA253GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
TSA: Dianthus superbus Ds_CL517Contig1 mRNA sequence.
JL383675.1:224-243
AAATAATAAAGCAGGTGGAGTATTACTTCA224GCGATGAAAACTTGCCAAATGACAAGTTCTTGTTGAAATACTTGAACAAA
Tachina lurida genome assembly, chromosome: 3.
OX101754.1:159617450-159617469
TACAATCTAAGAGGAAGGAATTCTTGGCAT159617450GCGATGAAAACTTGCCAAATTTCTAAAATCATGTGGAGCTCCTATGATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTTGGCAAGTTTTCATCGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTGGCAAGTTTTCATCGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.208 | 0.200 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTGGCAAGTTTTCATCGC&k=0&no_gap=0&offset=0&limit=50
0.986 | 0.777 | search_minus_done; http://172.18.8.135:50400/match?q=GCGATGAAAACTTGCCAAAT&k=0&no_gap=0&offset=0&limit=46
0.994 | 0.008 | cgi_end;

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