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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 16:43:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lotus japonicus genomic DNA, chromosome 6, clone: LjT47N19, TM1843.
AP010305.1:18992-19011
GGGAATCTTCGGGGTGGAATTCGATTTTGT18992ATTTGGGTTCACGAGAGCTGCTGGTTCCGCCGCCGCCGCCGCCGCCGCCG
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:50750433-50750452
GGGAATCTTCGGGGTGGAATTCGATTTTGT50750433ATTTGGGTTCACGAGAGCTGCTGGTTCCGCCGCCGCCGCCGCCGAATATG
Trifolium pratense cDNA clone:RCE02945.
BB904939.1:181-200
TGGTGGTGGTGGTAGTGGTGTTAGTAGTGG181CAGCTCTCGTGAACCCAAATACAAGATCGAATTCCACCCTGAAGAATCCC
LjNEST58h6r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI420577.1:179-198
CATATTCGGCGGCGGCGGCGGCGGAACCAG179CAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATTCCC
Lotus japonicus cDNA, clone: LjFL2-001-BB10, 5' end, suspension-cultured cells treated with salicylic acid or methyljasmonate.
BW621403.1:168-187
CATATTCGGCGGCGGCGGCGGCGGAACCAG168CAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATTCCC
Lotus japonicus cDNA, clone: LjFL2-015-BD12, 5' end, suspension-cultured cells treated with salicylic acid or methyljasmonate.
BW626535.1:153-172
CATATTCGGCGGCGGCGGCGGCGGAACCAG153CAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATTCCC
CTOY10694.b1_L10.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY10694, mRNA sequence.
DY818693.1:153-172
TTCCCAACTCATGGAGGTAGTATTAAGTCG153CAGCTCTCGTGAACCCAAATATGATATTGAATTCCACACAGAAGATTCAC
CTOY12616.b1_P10.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY12616, mRNA sequence.
DY820707.1:106-125
CTTCCCAACTCATGGAGGTAGCTTAAGTCG106CAGCTCTCGTGAACCCAAATATGATATTGAATTCCACACAGAAGATTCAC
CTOY12648.b1_P18.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY12648, mRNA sequence.
DY820740.1:106-125
CTTCCCAACTCATGGAGGTAGCTTAAGTCG106CAGCTCTCGTGAACCCAAATATGATATTGAATTCCACACAGAAGATTCAC
Lotus japonicus cDNA, clone: LjFL2-035-BF09, 5'-end sequence, suspension-cultured cells treated with salicylic acid or methyljasmonate.
FS316219.1:136-155
CATATTCGGCGGCGGCGGCGGCGGAACCAG136CAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATTCCC
Lotus japonicus cDNA, clone: LjFL3-024-DA12, 5'-end sequence.
FS326430.1:159-178
CATATTCGGCGGCGGCGGCGGCGGAACCAG159CAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATTCCC
Trifolium repens mRNA, clone: WCC43h19_012, unspecified EST.
FY469347.1:160-179
TGGTGGTGGTGGTGGTGGTGTTAGTAGTGG160CAGCTCTCGTGAACCCAAATACAAGATTGAATTCCATCCTGAAGAATCCC
Lotus japonicus cDNA, clone: LjFL2-001-BB10, HTC.
AK337858.1:166-185
CATATTCGGCGGCGGCGGCGGCGGAACCAG166CAGCTCTCGTGAACCCAAATACAAAATCGAATTCCACCCCGAAGATTCCC
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:41144700-41144719
TGGTGGTGGTGGTGGTGGTGTTAGTAGTGG41144700CAGCTCTCGTGAACCCAAATACAAGATTGAATTCCATCCTGAAGAATCCC
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:38158817-38158836
TGGTGGTGGTGGTGGTGGTGTTAGTAGTGG38158817CAGCTCTCGTGAACCCAAATACAAGATTGAATTCCATCCTGAAGAATCCC
Taraxacum brevicorniculatum putative ER lectin-like protein mRNA, partial cds.
MK117058.1:90-109
CTTCCCAACTCATGGAGGTAGCTTAAGTCG90CAGCTCTCGTGAACCCAAATATGATATTGAATTCCACACAGAAGATTCAC
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:7141421-7141440
ATTTGGCGGTGGTGGTGGTGTTAGCAGTGG7141421CAGCTCTCGTGAACCCAAATACAAGATTGAATTCCATCCTGAAGAATCCC
Smittia sp. YW1114-2 chromosome 3.
CP093834.1:11668100-11668119
GTTGTGTGTGTAAAATGCCATAGGGGTTGT11668100CAGCTCTCGTGAACCCAAATGGAAATAAAATAGAAGCGAGCACGACGAAT
Ischnura elegans genome assembly, chromosome: 3.
OV121102.1:103725291-103725310
ACACAAAAACGGATCTCCGTCCAGTTATAA103725291CAGCTCTCGTGAACCCAAATACCGGCGGCACAAGGAAATTCGGCACGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTTGGGTTCACGAGAGCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTGGGTTCACGAGAGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTGGGTTCACGAGAGCTG&k=0&no_gap=0&offset=0&limit=50
0.589 | 0.469 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTCTCGTGAACCCAAAT&k=0&no_gap=0&offset=0&limit=48
0.600 | 0.011 | cgi_end;

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