GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 08:56:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium raimondii isolate D5-4 chromosome D5_11.
CP032563.1:64927704-64927723
GTATGGTATTCAAAATGAGGAGATGGACAT64927704ATTTTATGGGAATGGGGTCCTTAGATTTGAATGGAGAAAGCAAGGGACTA
Gossypium herbaceum isolate Zhongcao1 chromosome 11.
CP106686.1:129295230-129295249
GAGGAGATGAATAAGTGTGAAGATGGACAT129295230ATTTTATGGGAATGGGGTCCTTAGATTTTAATGGAGACCATTAAGGATTG
Gossypium rotundifolium isolate GPK201 chromosome 11.
CP106732.1:185978584-185978603
AAGGAGATGAATAAGTGTGAAGATGGACAT185978584ATTTTATGGGAATGGGGTCCTTGGATTTTAATGGAGGCTATTAAGTATTA
Anopheles bellator genome assembly, chromosome: 1.
OX030927.2:6435468-6435487
GAGTGGACCCCCGCGCGGGGGGGTTAAGTA6435468ATTTTATGGGAATGGGGTCCACCAAGGAGGAGGAGTTTATGAACAAAACG
Empis stercorea genome assembly, chromosome: 4.
OX457088.1:27548211-27548230
AGCATATGCGGCAAATGCGACAAATGAATA27548211ATTTTATGGGAATGGGGTCCCTAATGCCAGACCCTTTTAATATGTTGACC
Solanum melongena mRNA, clone: OVS02H05, 3'end, expressed in ovary at 5d pre-anthesis.
FS030427.1:205-224
CAAAGAGGGTACACAAAAATAAACAGACAA205GGACCCCATTCCCATAAAATCAGTTCATCTGTCATTTTACCTATGCATTA
Gossypium turneri isolate D10-2 chromosome D10_11.
CP032581.1:1035448-1035467
TAGTCCCTTGCTTTCTCCATTAAAATCTAA1035448GGACCCCATTCCCATAAAATATGTCCATCTTCACACTTATTACACAAAAT
Gossypium herbaceum isolate GPA1alz chromosome 11.
CP106704.1:947020-947039
CAATCCTTAATGGTCTCCATTAAAATCTAA947020GGACCCCATTCCCATAAAATATGTCCATCTTCACACTTATTCATCTCCTC
Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:986085-986104
CAATACTTAATAGCCTCCATTAAAATCTAA986085GGACCCCATTCCCATAAAATATGTCCATCTTCACACTTATTCATCTCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTTTATGGGAATGGGGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTTATGGGAATGGGGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTTATGGGAATGGGGTCC&k=0&no_gap=0&offset=0&limit=50
0.203 | 0.100 | search_minus_done; http://172.18.8.135:50400/match?q=GGACCCCATTCCCATAAAAT&k=0&no_gap=0&offset=0&limit=45
0.206 | 0.003 | cgi_end;

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