GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:17:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES07N09, 5' end sequence.
FY385060.1:430-449
TGCCGCTGCTGCCCGACGACTCGGAAACAT430GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
Dianthus caryophyllus mRNA, clone: CES09J16, 5' end sequence.
FY385732.1:432-451
TGCCGCTGCTGCCCGACGACTCGGAAACAT432GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
Dianthus caryophyllus mRNA, clone: CFES21N24, 5' end sequence.
FY402020.1:536-555
TGCCGCTGCTGCCCGACGACTCGGAAACAT536GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.613.C1.
FX297774.1:535-554
TGCCGCTGCTGCCCGACGACTCGGAAACAT535GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
Melitaea cinxia chromosome 9.
CP049656.1:1312407-1312426
TTAAGTATTTGTATTGTTTACATATATTTT1312407GCGTTGTCGGTCTTGAAAATGCCTTTGACGTTTGAAAGTTTTCTTGTCTA
Melitaea cinxia genome assembly, chromosome: 5.
HG992214.1:1421277-1421296
TTAAGTATTTGTATTGTTTACATATCTTTT1421277GCGTTGTCGGTCTTGAAAATGCCTTTGACGTTTGAAAGTTTTCTTATCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATTTTCAAGACCGACAACGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTTCAAGACCGACAACGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTTCAAGACCGACAACGC&k=0&no_gap=0&offset=0&limit=50
0.323 | 0.230 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTTGTCGGTCTTGAAAAT&k=0&no_gap=0&offset=0&limit=50
0.327 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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