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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 11:50:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cajanus cajan cultivar UPAS 120 contig29157.UPAS mRNA sequence.
EZ646874.1:503-527
TGATTAAATTTTCAAAATAGATTTGTCAAT503AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Cajanus scarabaeoides chloroplast, complete genome.
KU729878.1:30863-30887
TGATTAAATTTTCAAAATAGATTTGTCAAT30863AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Cajanus cajan chloroplast, complete genome.
KU729879.1:30864-30888
TGATTAAATTTTCAAAATAGATTTGTCAAT30864AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Cajanus reticulatus isolate E657 trnD-trnY intergenic spacer, partial sequence; tRNA-Tyr (trnY) gene, trnY-trnE intergenic spacer, and tRNA-Glu (trnE) gene, complete sequence; and trnE-trnT intergenic
KX213343.1:1207-1231
TGATTAAATTTTCAAAATAGATTTGTCAAT1207AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Cajanus scarabaeoides isolate E658 trnD-trnY intergenic spacer, partial sequence; tRNA-Tyr (trnY) gene, trnY-trnE intergenic spacer, and tRNA-Glu (trnE) gene, complete sequence; and trnE-trnT intergen
KX213344.1:1206-1230
TGATTAAATTTTCAAAATAGATTTGTCAAT1206AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Rhynchosia clivorum isolate E511 trnD-trnY intergenic spacer, partial sequence; tRNA-Tyr (trnY) gene, trnY-trnE intergenic spacer, and tRNA-Glu (trnE) gene, complete sequence; and trnE-trnT intergenic
KX213346.1:1255-1279
TGATTCCTTTTTAAAAATCGATTTGTCAAT1255AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Flemingia strobilifera isolate E190 trnD-trnY intergenic spacer, partial sequence; tRNA-Tyr (trnY) gene, trnY-trnE intergenic spacer, and tRNA-Glu (trnE) gene, complete sequence; and trnE-trnT interge
KX213352.1:1243-1267
TGATTCCATTTTCAAAATAGATTTGTCAAT1243AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGAAATATATCTATCT
Cajanus cajan chloroplast, complete genome.
KX672004.1:31605-31629
TGATTAAATTTTCAAAATAGATTTGTCAAT31605AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Cajanus crassus chloroplast, complete genome.
MN936098.1:31305-31329
TGATTAAATTTTCAAAATAGATTTGTCAAT31305AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATCGATATATATCTATCT
Dunbaria nivea chloroplast, complete genome.
MN966627.1:31396-31420
TGATTCAATTTTCAAAATCGATTTGTCAAT31396AACAAACGTAATCTGTGTTGATCTCACTAAAGTGGATATAGATCTATATCTATCT
TSA: Cajanus cajan cultivar Asha contig31843.Asha mRNA sequence.
EZ679707.1:114-138
AGATAGATATATATCGATATCCACTTTAGT114GAGATCAACACAGATTACGTTTGTTATTGACAAATCTATTTTGAAAATTTAATCA
60-L026093.SEQ Pigeonpea genomic pBluescript library Cajanus cajan genomic 3', genomic survey sequence.
CZ445521.1:412-436
AGATAGATATATATCGATATCCACTTTAGT412GAGATCAACACAGATTACGTTTGTTATTGACAAATCTATTTTGAAAATTTAATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/Aacaaacgtaatctgtgttgatctc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : Aacaaacgtaatctgtgttgatctc | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.148 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=AACAAACGTAATCTGTGTTGATCTC&k=0&no_gap=0&offset=0&limit=50
0.203 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATCAACACAGATTACGTTTGTT&k=0&no_gap=0&offset=0&limit=40
0.204 | 0.001 | cgi_end;

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