GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:21:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum EJ_MegaContig_3704, mRNA sequence.
JW129281.1:24-47
ATCCCAACTCCCTAAACATATTA24CAAAAATCCCAACATATTCACAGAATGTTATGTATATGTCGGCTATGTCATGTA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:17736512-17736535
ATAAAAAATCCCAACTCCCTAATCATATTA17736512CAAAAATCCCAACATATTCACAGAATGCTATGTATATGTCGGCTATGTTCCCTA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:17736575-17736598
ATATGTCGGCTATGTTCCCTAATCATATTA17736575CAAAAATCCCAACATATTCACAGAATGCTATGTATATGTCGGCTATGTTATGTA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:35898107-35898130
ACAAAAAATCCCAACTCCCTAAACATATTA35898107CAAAAATCCCAACATATTCACAGAATGTTATGTATATGTCGGCTATGTCATGTA
KS25001N10 KS25 Capsicum annuum cDNA, mRNA sequence.
GD123968.1:599-622
TATATATATATATATATATATATATAGCAT599TCTGTGAATATGTTGGGATTTTTGTAATATGTTTAGGGAGTTGATATT
KS25053L02 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128647.1:599-622
TATATATATATATATATATATATATAGCAT599TCTGTGAATATGTTGGGATTTTTGTAATATGTTTAGGGAGTTGATATTTTTT
TSA: Capsicum annuum MGMT_Contig24689, mRNA sequence.
JW074933.1:319-342
TACATAACATAGCCGACATATACATAACAT319TCTGTGAATATGTTGGGATTTTTGTAATATGTTTAGGGAGTTGGGATTTTTTGT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:19532064-19532087
TATATATATATATATATATATATATAGCAT19532064TCTGTGAATATGTTGGGATTTTTGTAATATGTTTAGGGAGTTGATATTTTTTGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:18683048-18683071
TATATATATATATATATATATATATAGCAT18683048TCTGTGAATATGTTGGGATTTTTGTAATATGTTTAGGGAGTTGATATTTTTTGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:237307731-237307754
TACATAACATAGCCGACATATACATAGCAT237307731TCTGTGAATATGTTGGGATTTTTGTAATATGATTAGGGAACATAGCCGACATAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:237307794-237307817
TAGGGAACATAGCCGACATATACATAGCAT237307794TCTGTGAATATGTTGGGATTTTTGTAATATGATTAGGGAGTTGGGATTTTTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAAAATCCCAACATATTCACAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAAATCCCAACATATTCACAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.123 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAAATCCCAACATATTCACAGA&k=0&no_gap=0&offset=0&limit=50
0.359 | 0.227 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGTGAATATGTTGGGATTTTTG&k=0&no_gap=0&offset=0&limit=46
0.363 | 0.005 | cgi_end;

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