GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 05:06:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:1125776-1125798
ATAAGTAATGGGCATTATTTTGAAATCTCA1125776CAAAAGCAGAGTCAGGAGACATTGCAAGGTTGGTCTAAGATAACATTACCTAG
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:157379-157401
CTAGGTAATGTTATCTTAGACCAACCTTGC157379AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTACTTAT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:174697-174719
CTAGGTACTGCTATCTTAGACCAACCTTGC174697AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:170632-170654
CTAGGTACTGTTATCTTAGACCAACCTTGC170632AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:177551-177573
CTAGGTACTGTTATCTTAGACCAACCTTGC177551AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:146823-146845
CTAGGTACTGTTATCTTAGACCAACCTTGC146823AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:179198-179220
CTAGGTACTGTTATCTTAGACCAACCTTGC179198AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:175874-175896
CTAGGTACTGTTATCTTAGACCAACCTTGC175874AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:174124-174146
CTAGGTACTGTTATCTTAGACCAACCTTGC174124AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:185286-185308
CTAGGTACTGCTATCTTAGACCAACCTTGC185286AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:181220-181242
CTAGGTACTGTTATCTTAGACCAACCTTGC181220AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:175259-175281
CTAGGTACTGTTATCTTAGACCAACCTTGC175259AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:190118-190140
CTAGGTACTGTTATCTTAGACCAACCTTGC190118AATGTCTCCTGACTCTGCTTTTGTAAGATTTCTTTTTTTTTTTGTTGTCAAAT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:165462-165484
CTAGGTACTGTTTTCTTAGACCAACCTTGC165462AATGTCTCCTGACTCTGCTTTTGTGAGATTTCAAAATAATGCCCATTGCTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAAAGCAGAGTCAGGAGACATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAAGCAGAGTCAGGAGACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.090 | 0.081 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAAGCAGAGTCAGGAGACATT&k=0&no_gap=0&offset=0&limit=50
0.107 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=AATGTCTCCTGACTCTGCTTTTG&k=0&no_gap=0&offset=0&limit=49
0.115 | 0.008 | cgi_end;

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