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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:25:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

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Results:

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GH_RTFR_32R_B11_InvR_14Sep04_093_R Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW235194.1:238-257
TCCACAATTTGTCTAACCTGGGTGTTACCC238CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAACTAATTTAAATCTA
rayctn0_0036_F02.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO091964.1:244-263
TCCACAATTTGTCTAACCTGGGTGTTACCC244CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAACTAATTTAAATCTA
rayctn0_0080_H11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO095356.1:239-258
TCCACAATTTGTCTAACCTGGGTGTTACCC239CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAACTAATTTAAATCTA
rayctn0_0114_D04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO097953.1:249-268
TCCACAATTTGTCTAACCTGGGTGTTACCC249CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAACTAATTTAAATCTA
EST228 Library from 10 dpa ovule bearing fibre of Gossypium arboreum L. Gossypium arboreum cDNA, mRNA sequence.
JZ554988.1:18-37
TAACCTGGGTGTTACCC18CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAACTAATTTAAATCTA
TSA: Betula platyphylla Unigene6033_ya_RNA mRNA sequence.
JP674158.1:309-328
CGTTTCCAATCCAAGCACACACAGCAGCAA309CAAAATGGAAAACCCAGAACTTATTTCTCTTCAAAATCTCAGATCAAATC
TSA: Betula platyphylla Unigene36472_All.Beplwood mRNA sequence.
KA276393.1:2701-2720
CGTTTCCAATCCAAGCACACACAGCAGCAA2701CAAAATGGAAAACCCAGAACTTATTTCTCTTCAAAATCTCAGATCAAATC
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:50689334-50689353
TCCACAATTTGTCTAACCTGGGTGTTACCC50689334CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAAATAATTTAAATCTA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:113185972-113185991
TCCACAATTTGTCTAACCTGGGTGTTACCC113185972CAAAATGGAAAACCCAGAACTCGAAAGCCCTTCAAACTAATTTAAATCTA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:177873399-177873418
TCCACAATTTGTCTAACCTGGGTGTTACCC177873399CAAAATGGAAAACCCAGAACTCAAAAGCCCTTCAAACTAATTTAAATCTA
Sequence 7833 from patent US 7557201.
GP476836.1:89-108
TAGATTTAAATTAGTTTGAAGGGCTTTCGA89GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
Sequence 8031 from patent US 7557201.
GP477034.1:54-73
TAGATTTAAATTAGTTTGAAGGGCTTTCGA54GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
Sequence 19758 from patent US 7557201.
GP488761.1:198-217
TAGATTTAAATTAGTTTGAAGGGCTTTCGA198GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
BNLGHi8400 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW186991.1:522-541
TAAATTTAAATTAGTTTGAAGGGCTTTCGA522GTTCTGGGTTTTCCATTTTGGGGTAACACCCANGTTAGACAAATTGTGGA
GA__Ea0013H02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0013H02f, mRNA sequence.
BE051997.2:334-353
TAAATTTAAATTAGTTTGAAGGGCTTTCGA334GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
GA__Ea0013H02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0013H02r, mRNA sequence.
BM358841.1:334-353
TAGATTTAAATTAGTTTGAAGGGCTTTCGA334GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
CRH5.4G12 Cotton Root and Hypocotyl Lambda ZIPLOX Library (CRH) Gossypium hirsutum cDNA clone CRH5.4G12 5', mRNA sequence.
CD486716.1:246-265
TAGATTTAAATTAGTTTGAAGGGCTTTCGA246GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GR__Ea31E18.r GR__Ea Gossypium raimondii cDNA clone GR__Ea31E18 3', mRNA sequence.
CO072228.1:155-174
TAGATTTAAATTAGTTTGAAGGGCTTTCGA155GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GR__Ea34D11.r GR__Ea Gossypium raimondii cDNA clone GR__Ea34D11 3', mRNA sequence.
CO074223.1:206-225
TAGATTTAAATTAGTTTGAAGGTCTTTCGA206GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GR__Ea42B02.r GR__Ea Gossypium raimondii cDNA clone GR__Ea42B02 3', mRNA sequence.
CO079344.1:159-178
TAGATTTAAATTAGTTTGAAGGGCTTTCGA159GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GR__Ea06I06.f GR__Ea Gossypium raimondii cDNA clone GR__Ea06I06 5', mRNA sequence.
CO087856.1:76-95
TAGATTTAAATTAGTTTGAAGGGCTTTCGA76GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GH_CHX09H11.x GH_CHX Gossypium hirsutum cDNA clone GH_CHX09H11 5', mRNA sequence.
DT462204.1:199-218
TAGATTTAAATTAGTTTGAAGGGCTTTCGA199GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1056627 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT545987.1:54-73
TAGATTTAAATTAGTTTGAAGGGCTTTCGA54GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
EST1060265 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT549625.1:202-221
TAGATTTAAATTAGTTTGAAGGGCTTTCGA202GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1061283 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT550643.1:84-103
TAGATTTAAATTAGTTTGAAGGGCTTTCGA84GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1066433 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT555793.1:195-214
TAGATTTAAATTAGTTTGAAGGGCTTTCGA195GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1070260 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559620.1:84-103
TAGATTTAAATTAGTTTGAAGGGCTTTCGA84GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
EST1070523 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559883.1:218-237
TAGATTTAAATTAGTTTGAAGGGCTTTCGA218GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1071809 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT561169.1:84-103
TAGATTTAAATTAGTTTGAAGGGCTTTCGA84GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1074597 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT563957.1:487-506
TAGATTTAAATTAGTTTGAAGGGCTTTCGA487GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
EST1076096 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT565456.1:604-623
TAGATTTAAATTAGTTTGAAGGGCTTTCGA604GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1076669 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566029.1:412-431
TAGATTTAAATTAGTTTGAAGGGCTTTCGA412GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1077274 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566634.1:518-537
TAGATTTAAATTAGTTTGAAGGGCTTTCGA518GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
EST1079895 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569255.1:84-103
TAGATTTAAATTAGTTTGAAGGGCTTTCGA84GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1081357 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT570717.1:502-521
TAGATTTAAATTAGTTTGAAGGGCTTTCGA502GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1081442 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT570802.1:84-103
TAGATTTAAATTAGTTTGAAGGGCTTTCGA84GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1085350 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT574710.1:54-73
TAGATTTAAATTAGTTTGAAGGGCTTTCGA54GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
EST1085677 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT575037.1:201-220
TAGATTTAAATTAGTTTGAAGGGCTTTCGA201GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GH_RTFR_11R_D02_InvR_13Sep04_010_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW233830.1:111-130
TAGATTTAAATTAGTTTGAAGGGCTTTCGA111GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
GH_RTFR_27R_F02_InvR_14Sep04_006_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW234873.1:239-258
TAGATTTAAATTAGTTTGAAGGGCTTTCGA239GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
GH_RTMF_01R_D05_InvR_09Aug04_041_F Root (free) - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW235972.1:216-235
TAGATTTAAATTAGTTTGAAGGGCTTTCGA216GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GH_RTMF_01R_F01_InvR_09Aug04_005_F Root (free) - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW235995.1:130-149
TAGATTTAAATTAGTTTGAAGGGCTTTCGA130GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GH_RTMF_03R_G04_InvR_09Aug04_020_F Root (free) - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW236262.1:216-235
TAGATTTAAATTAGTTTGAAGGGCTTTCGA216GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GH_RTMF_06R_E03_InvR_09Aug04_023_F Root (free) - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW236632.1:267-286
TAGATTTAAATTAGTTTGAAGGGCTTTCGA267GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
GH_TMIRS_117_F08_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW507788.1:129-148
TAGATTTAAATTAGTTTGAAGGGCTTTCGA129GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
GH_TMIRS_187_C08_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW514996.1:282-301
TAGATTTAAATTAGTTTGAAGGGCTTTCGA282GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
UFL_646_86 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES807506.1:525-544
TAGATTTAAATTAGTTTGAAGGGCTTTCGA525GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
UFL_240_36 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES829063.1:191-210
TAGATTTAAATTAGTTTGAAGGGCTTTCGA191GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
UFL_137_96 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES846866.1:195-214
TAGATTTAAATTAGTTTGAAGGGCTTTCGA195GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
F06_F-29_048 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX172484.1:345-364
TAGATTTAAATTAGTTTGAAGGGCTTTCGA345GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGNGGA
rmhcyb0_000454 SSH library of differentially expressed genes response to medium changes during cotton somatic embryogenesis Gossypium hirsutum cDNA clone rmhcyb0_000454, mRNA sequence.
FG551462.1:433-452
TAGATTTAAATTAGTTTGAAGGGCTTTCGA433GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
EST005175 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 20-A02 5', mRNA sequence.
GR711975.1:200-219
TAGATTTAAATTAGTTTGAAGGGCTTTCGA200GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
mhczaa0_021003.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_021003.z1, mRNA sequence.
JG838542.1:254-273
TAGATTTAAATTAGTTTGAAGGGCTTTCGA254GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
TSA: Betula platyphylla Unigene72595_All.Beplwood mRNA sequence.
KA231607.1:156-175
GATTTGATCTGAGATTTTGAAGAGAAATAA156GTTCTGGGTTTTCCATTTTGTTGCTGCTGTGTGTGCTTGGATTGGAAACG
Gossypioides kirkii chromosome KI_01.
CP032244.1:6806534-6806553
TAGGTTTAAATTTGTTTGAAGGGCATTCGA6806534GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:9850762-9850781
TAGATTTAAATTAGTTTGAAGGGCTTTCGA9850762GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGTCAAATTGTGGA
Carpinus viminea chromosome 6.
CP054672.1:35403817-35403836
TTTGATCTGGGATTTTGAAGAGAACTGAAA35403817GTTCTGGGTTTTCCATTTTGTTGCTTGCGTGTGTGCTTGGATTGGAAACG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:12504749-12504768
TAGATTTAAATTAGTTTGAAGGGCTTTCGA12504749GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:14805183-14805202
TAGATTTAAATTAGTTTGAAGGGCTTTCGA14805183GTTCTGGGTTTTCCATTTTGGGGTAACACCCAGGTTAGACAAATTGTGGA
Gossypium herbaceum clone NBRI_E2_605 simple sequence repeat marker, mRNA sequence.
HQ525229.1:205-224
AGATTTAAATNTAGTTTGAAGGGCTTTCGA205GTTCTGGGTTTTCCATTTTGGNGGTAACACCCAGGTTAGACANAATTGTG
Edaphobacter lichenicola strain DSM 104462 chromosome, complete genome.
CP073696.1:2983637-2983656
TGCTTTCCCTAGGTAGAAATGCGTCATAAA2983637GTTCTGGGTTTTCCATTTTGCAGCGGCGTCTGTGGCGAAGAGCGGGCGGA
Sneathiella marina strain PHK-P5 chromosome, complete genome.
CP098747.1:616125-616144
TTCCAAGGTGCAGGAAATCGAAATCCCTGC616125GTTCTGGGTTTTCCATTTTGCGAATGCGTATGATGAGCCAGACGGATCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAAATGGAAAACCCAGAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAATGGAAAACCCAGAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.674 | 0.665 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAATGGAAAACCCAGAAC&k=0&no_gap=0&offset=0&limit=50
3.108 | 2.435 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCTGGGTTTTCCATTTTG&k=0&no_gap=0&offset=0&limit=40
3.142 | 0.034 | cgi_end;

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