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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 02:49:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

88-E022905-021-018-P22-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022P2218Q, mRNA sequence.
CX188163.1:669-688
CGCTGCGTGTGGGATTCAGAAGAATCTTAT669CAAACCGGGACTTAGCTTGAAAAGTCCTCGAGGTAATAAGACGGAGATGC
225h01w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965335.1:269-288
CGCTGCGTGTGGGATTCAGAAGAATCTTAT269CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
76ETGS72_UP_007_G05_11MAY2005_035 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE449956.1:320-339
CGCTGCGTGTGGGATTCAGAAGAATCTTAT320CAAACCGGGACTTAGCTTGAAAAGTCCTCGAGGAAATAGGACGGAGATGC
BNSCS3CT_UP_021_E04_11JAN2005_024 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466626.1:228-247
CGCTGCGTGTGGGATTCAGAAGAATCTTAT228CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
46RDOAG_UP_004_H02_24SEP2004_002 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE530425.1:370-389
CGCTGCGTGTGGGATTCAGAAGAATCTTAT370CAAACCGGGACTTAGCTTGAAAAGTCCTCGAGGTAATAAGACGGAGATGC
OL4676R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL4676, mRNA sequence.
EH420853.1:450-469
CGCTGCGTGTGGGATTCAGAAGAATCTTAT450CAAACCGGGACTTAGCTTGAAAAGTCCTCGAGGTAATAAGACGGAGATGC
0165791 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV164072.1:705-724
CGCTGCGTGTGGGATTCAGAAGAATCTTAT705CAAACCGGGACTTAGCTTGA
BR057816 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-012D08 5', mRNA sequence.
EX073172.1:307-326
CGCTGCGTGTGGGATTCAGAAGAATCTTAT307CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1801.
FX693420.1:1458-1477
CGCTGCGTGTGGGATTCAGAAGAATCTTAT1458CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6707.
FX726891.1:1497-1516
CGCTGCGTGTGGGATTCAGAAGAATCTTAT1497CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
KBrB086M23F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB086M23, genomic survey sequence.
DX075740.1:622-641
CGCTGCGTGTGGGATTCAGAAGAATCTTAT622CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
AC189499.2:714-733
CGCTGCGTGTGGGATTCAGAAGAATCTTAT714CAAACCGGGACTTAGCTTGAAAAGTCCTCGGGGTAATAAGACGGAGATGC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:52094406-52094425
CGCTGCGTGTGGGATTCAGAAGAATCTTAT52094406CAAACCGGGACTTAGCTTGAAAAGTCCTCGAGGTAATAAGACGGAGATGC
139b11w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN962460.1:577-596
GCATCTCCGTCTTATTACCCCGAGGACTTT577TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
200b08 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN963818.1:577-596
GCATCTCCGTCTTATTACCCCGAGGACTTT577TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:7297746-7297765
GCATCTCCGTCTTATTACCCCGAGGACTTT7297746TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:6063913-6063932
GCATCTCCGTCTTATTACCCCGAGGACTTT6063913TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:7135484-7135503
GCATCTCCGTCTTATTACCTCGAGGACTTT7135484TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
Brassica rapa genome, scaffold: A06.
LR031569.1:6059308-6059327
GCATCTCCGTCTTATTACCCCGAGGACTTT6059308TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:7013665-7013684
GCATCTCCGTCTTATTACCTCGAGGACTTT7013665TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:6891446-6891465
GCATCTCCGTCTTATTACCCCGAGGACTTT6891446TCAAGCTAAGTCCCGGTTTGATAAGATTCTTCTGAATCCCACACGCAGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAACCGGGACTTAGCTTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAACCGGGACTTAGCTTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.902 | 0.893 | search_plus_done; http://172.18.8.135:50400/match?q=CAAACCGGGACTTAGCTTGA&k=0&no_gap=0&offset=0&limit=50
1.111 | 0.209 | search_minus_done; http://172.18.8.135:50400/match?q=TCAAGCTAAGTCCCGGTTTG&k=0&no_gap=0&offset=0&limit=37
1.116 | 0.005 | cgi_end;

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