GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:41:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHPV24TF BOHP Brassica oleracea genomic clone BOHPV24, genomic survey sequence.
BH456426.1:611-630
TGAAGCTACCGGCCGTTGCTTTCTCCAAGA611CAAACCTTACGCACAACACCAAAAACGTAAGCACAGCGAAGCTTAAACCA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:35232277-35232296
TGATCCCACCAGCAGCAGCTTTCCCTATCA35232277CAAACCTTACGCACAACACCACAAACGTCAGCACCGCAAACCCCAAACCA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:21232555-21232574
TGAAGCTACCAGCCGTTGCTTTCTCCAAGA21232555CAAACCTTACGCACAACACCAAAAACGTAAGCACAGCGAAGCTTAAACCA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:28793393-28793412
TGATCCCACCAGCAGCAGCTTTCCCTATCA28793393CAAACCTTACGCACAACACCACAAACGTCAGCACCGCAAACCCCAAACCA
Brassica rapa genome, scaffold: A07.
LR031574.1:17430050-17430069
TGATCCCACCAGCAGCAGCTTTCCCTATCA17430050CAAACCTTACGCACAACACCACAAACGTCAAAACCGCAAACCCCAAACCA
Brassica rapa genome, scaffold: A04.
LR031576.1:19829690-19829709
TGAAGCTACCAGCCGTTGCTTTCTCCAAGA19829690CAAACCTTACGCACAACACCAAAAACGTAAGCACAGCGAAGCTTAAACCG
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:63275020-63275039
TGAAGCTACCGGCCGTTGCTTTCTCCAAGA63275020CAAACCTTACGCACAACACCAAAAACGTAAGCACAGCGAAGCTTAAACCA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:25437878-25437897
TGATCCCACCAGCAGCAGCTTTCCCTATCA25437878CAAACCTTACGCACAACACCACAAACGTCAGCACCGCAAACCCCAAACCA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:20248517-20248536
TGAAGCTACCAGCCGTTGCTTTCTCCAAGA20248517CAAACCTTACGCACAACACCAAAAACGTAAGCACAGCGAAGCTTAAACCG
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:17721479-17721498
TGATCCCACCAGCAGCAGCTTTCCCTATCA17721479CAAACCTTACGCACAACACCACAAACGTCAAAACCGCAAACCCCAAACCA
Sequence 20605 from Patent WO2008034648.
FB801332.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 55997 from Patent WO2008034648.
FB836724.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 88232 from Patent WO2008034648.
FB868959.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 107159 from Patent WO2008034648.
FB887886.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 20605 from Patent EP2090662.
HB671391.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 55997 from Patent EP2090662.
HB706783.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 88232 from Patent EP2090662.
HB739018.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 107159 from Patent EP2090662.
HB757945.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Sequence 183857 from Patent EP2090662.
HB834643.1:1095-1114
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1095GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
BOHHR01TR BOHH Brassica oleracea genomic clone BOHHR01, genomic survey sequence.
BH533041.1:144-163
TGGTTTAAGCTTCGCTGTGCTTACGTTTTT144GGTGTTGTGCGTAAGGTTTGTCTTGGAGAAAGCAACGGCCGGTAGCTTCA
B.oleracea BCA1 mRNA for Ca2+-ATPase.
X99972.1:1196-1215
TGGTTTGGGGTTTGCGGTGCTGACGTTTGT1196GGTGTTGTGCGTAAGGTTTGTGATAGGGAAAGCTGCTGCTGGTGGGATCA
Alviniconcha strummeri genome assembly, chromosome: 10.
OY757550.1:9756496-9756515
ACCATTAACCGAGTTCACGTCATACGTGTG9756496GGTGTTGTGCGTAAGGTTTGGAAGCTGTGTCAAGGTCACGATGAGGAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAACCTTACGCACAACACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAACCTTACGCACAACACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.144 | 0.135 | search_plus_done; http://172.18.8.135:50400/match?q=CAAACCTTACGCACAACACC&k=0&no_gap=0&offset=0&limit=50
0.372 | 0.228 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGTTGTGCGTAAGGTTTG&k=0&no_gap=0&offset=0&limit=40
0.381 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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