GGGenome | Results

Help | Japanese

2025-04-09 00:09:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Muscardinus avellanarius genome assembly, chromosome: 22.
OY726579.1:15914558-15914576

GGAGGCGGAGACAGGAGGATCCCACAGATT15914558CAAAGCCAGCCATTCTCCTCCCCCCCCCCAAAAAAAGTATAAAATAGGT

Sequence 1665 from patent US 8937215.
HK372303.1:18-36

TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

Sequence 1665 from patent US 9574200.
KH564857.1:18-36

TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

Sequence 1665 from patent US 10227607.
MM771856.1:18-36

TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

Sequence 1665 from patent US 10883115.
MX198022.1:18-36

TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

Sequence 1665 from patent US 11530418.
OO986533.1:18-36

TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

USDA-FP_117000-772 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-24_H12 5', mRNA sequence.
CF419831.1:4-22

GTC4CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT

CGF1004540_A01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A01 5', mRNA sequence.
CK934214.1:24-42

GGGGATTCAATCTTTAATTCTTC24CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

CGF1004259_F07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F07 5', mRNA sequence.
CK934391.1:24-42

GGGGATTCAATCTTTAATTCTTC24CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT

CS00-C1-100-012-E04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY650574.1:12-30

CCACGCGTCCG12CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT

CS00-C1-100-124-D02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY656764.1:20-38

CCACGCGTCCGAATTCTTC20CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

CS00-C1-101-014-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY659755.1:14-32

CCACGCGTCCGTC14CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT

CS00-C3-701-037-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704853.1:52-70

AGAGGCGCTCCATTCAATCTTTAATTCTTC52CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

CS00-C3-702-030-B12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY713371.1:13-31

CCACGCGTCCGC13CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

CS00-C3-705-071-D12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY742482.1:1-19

1CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT

CR05-C1-100-003-F09-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY758413.1:18-36

ACCCACGCGTCCGCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

CR05-C1-102-064-B09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY772336.1:44-62

GTCGGATTCCGGGTCGACCCACGCGTCCGC44CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

CG32-C1-003-091-B03-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY857987.1:213-231

GGTATTGAACAAGTTGCTGTATAATTCTTC213CAAAGCCAGCCATTCTCCTCGTCCTTTATCTTCTCCTCTTCATTAAACT

LT33-C1-003-003-C06-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY878670.1:2-20

C2CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

C31402G04EF CTVClemen1 Citrus clementina cDNA clone C31402G04, mRNA sequence.
FC875330.1:21-39

GATTCAATCTTTAATTCTTC21CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT

TSA: Porites australiensis mRNA, contig: Pau-assembly_27992.
FX463223.1:1157-1175

AAGAGGATATAGCAGCAAAAGTAAATGTAC1157CAAAGCCAGCCATTCTCCTCTGCAATTGCAGCCACAAGCTCCGGAAATC

Citrus unshiu putative GDP-mannose-3,5-epimerase mRNA, complete cds.
HQ224947.1:20-38

ATTCAATCTTTAATTCTTC20CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC

Macrobrachium nipponense isolate FS-2020 chromosome 4.
CP062050.1:25290460-25290478

TCTGGCTTTTCTCTCAAACCAACTTACACA25290460CAAAGCCAGCCATTCTCCTGTTTTGCTGTTCGAACAGACTTCAAGCCTT

Sciurus carolinensis genome assembly, chromosome: 15.
LR738605.1:50638083-50638101

CCGGAGAAGGTTTTGTCACAGGAGGACAAG50638083AGGAGAATGGCTGGCTTTGGCATTGCCATGGATGCACAGTCCTAACCTG

Apteryx australis mantelli genome assembly, scaffold: scaffold390.
LK064987.1:1597987-1598005

ACCATCCTGGTCTGTCGTGGGCCTGACCCG1597987AGGAGAATGGCTGGCTTTGCAGGCAGCGATCAAAGGAGCACCTTTTCCT

Apteryx australis mantelli genome assembly, scaffold: scaffold390.
LK064987.1:1601434-1601452

ACCATCCTGGTCTGTCGTGGGCCTGACCCG1601434AGGAGAATGGCTGGCTTTGCAGGCAGCGATCAAAGGAGCACCTTTTCCT

Echeneis naucrates genome assembly, chromosome: 4.
LR584045.1:12663384-12663402

ATTCATACAAAATAATCTCACATGAAGACA12663384AGGAGAATGGCTGGCTTTGGGGATAAAGAAAGGAGGTGGGTAGGAGATG

Nannobrachium achirus genome assembly, chromosome: 5.
OY997642.1:10934183-10934201

AACAAGATCAGGGACGGAATGGGCTTTCTC10934183AGGAGAATGGCTGGCTTTGCCCTCAGCGATAGCAAGTAGACTTGCTGCT

Symbiodinium minutum DNA, clone: SYMB2-026G02, reverse.
GA411430.1:118-136

TTTTGTGAGAATTCTTCTTTGGATTTTTCA118AGGAGAATGGCTGGCTTTGGTACATTTACTTTTGCTGTAATCAGCTCAG

Symbiodinium minutum DNA, clone: SYMB2-041C04, forward.
GA422501.1:118-136

TTTTGTGAGAATTCTTCTTTGGATTTTTCA118AGGAGAATGGCTGGCTTTGGTACATTTACTTTTGCTGTAATCAGCTCAG

Symbiodinium minutum DNA, clone: SYMB2-080K08, reverse.
GA452124.1:118-136

TTTTGTGAGAATTCTTCTTTGGATTTTTCA118AGGAGAATGGCTGGCTTTGGTACATTTACTTTTGCTGTAATCAGCTCAG

Allium cepa genome assembly, chromosome: 5.
LR994633.1:40553962-40553980

CTATAATTGTAACCATATGGGGCATATGAA40553962AGGAGAATGGCTGGCTTTGGCAAGGAACCGAAGGTGTGTTATTTATTTT

Astragalus glycyphyllos genome assembly, chromosome: 2.
OY754308.1:41868772-41868790

TGCTTCTTAACATGGTTATTATGTCTCACG41868772AGGAGAATGGCTGGCTTTGGATGGGGGATCAGTCAGAGATCTTTTCGGT

Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:16993887-16993905

GTTTAATGAAAGAGGAGAAGATAAAGGAGG16993887AGGAGAATGGCTGGCTTTGGAAGAATTAAAGATTGAATGGAGCGCCTCT

Agriopis leucophaearia genome assembly, chromosome: 5.
OX421266.1:3257579-3257597

CTGTCACATCAAATCCGATTATAATCTCCC3257579AGGAGAATGGCTGGCTTTGATTAAAACGTATTGCTTTATTCTGTTCTTT

Cabera pusaria genome assembly, chromosome: 10.
OX940895.1:8816559-8816577

TATATTATAATGAGGGCCCAGTGGTGCATT8816559AGGAGAATGGCTGGCTTTGACGCCGTAGTTATTGGGTTAAAAACTTCAC

Sepioteuthis lessoniana genome assembly, chromosome: 15.
OY757918.1:37336289-37336307

TGGGTTAAATAGTACCACTACTGTTCTTCT37336289AGGAGAATGGCTGGCTTTGGCATTAAATAACCTAAGAAGAGTTGATATG

Sepioteuthis lessoniana genome assembly, chromosome: 35.
OY757938.1:4259624-4259642

TGGGTTAAATAGTACCACTACTATTTTTCT4259624AGGAGAATGGCTGGCTTTGGCATTAAATAACCTCCGAAAATTGATGACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAAGCCAGCCATTCTCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAGCCAGCCATTCTCCT | format : html | download : | debug :

0.009 | 0.009 | search_start;
1.098 | 1.089 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAGCCAGCCATTCTCCT&k=0&no_gap=0&offset=0&limit=50
1.247 | 0.149 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAGAATGGCTGGCTTTG&k=0&no_gap=0&offset=0&limit=27
1.257 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).