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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 02:51:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Conger conger genome assembly, chromosome: 4.
OY741317.1:20372202-20372220
CCGGAGTTTTAAATGAACATGAGTCAAACT20372202CAAAGGCATTGGGACAGTATTATGCGCATGGCTCAGTTGTATGCTTATC
Prunus dulcis DNA, pseudomolecule Pd05.
AP019301.1:10638520-10638538
TCTGAAGAACTCAAATCATTTCATGAATTA10638520CAAAGGCATTGGGACAGTAAAACTAACAGACAACAAAGAACAATTCCTT
Scotopteryx bipunctaria genome assembly, chromosome: 25.
OX439465.1:776784-776802
CAAGGACAGATCAAAATAATGATAATGCTT776784CAAAGGCATTGGGACAGTAACTCACCACTGTAACTCATGAATTTCAATC
Apteryx australis mantelli genome assembly, scaffold: scaffold100.
LK391417.1:8418413-8418431
CCTCAGTACTGAGTATTGCTCTCTTTCAGA8418413TACTGTCCCAATGCCTTTGCATTTCACTGGTCTTGCAGACTGAGTGGGA
Aquila chrysaetos chrysaetos genome assembly, chromosome: 18.
LR606198.1:22026612-22026630
GAACTCCTGAATGAATTCACATTTTTAAAC22026612TACTGTCCCAATGCCTTTGCATTAACATGTTTGTTGCCTCATAGTAATC
Accipiter gentilis genome assembly, chromosome: 20.
OV839381.1:21449842-21449860
GAACTCCTGAATGAATTCACATTTTTAAAC21449842TACTGTCCCAATGCCTTTGCATTAACATGTTTGTCACCTCGTAGTAATC
Cryptosporidium parvum cDNA, clone: XCPa000021, 5' end sequence, XCP Sugano cDNA library.
DK919692.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCATTAGAT
Cryptosporidium parvum cDNA, clone: XCPa000025, 5' end sequence, XCP Sugano cDNA library.
DK919695.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCCTTAGATGGTA
Cryptosporidium parvum cDNA, clone: XCPa000089, 5' end sequence, XCP Sugano cDNA library.
DK919747.1:405-423
TGGATTCAGTTGCCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa000092, 5' end sequence, XCP Sugano cDNA library.
DK919749.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGA
Cryptosporidium parvum cDNA, clone: XCPa000319, 5' end sequence, XCP Sugano cDNA library.
DK919949.1:404-422
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA404TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCCTTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa000603, 5' end sequence, XCP Sugano cDNA library.
DK920210.1:406-424
TGGATTCAGTTGCCCGAAGGTGTTAAGAAA406TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATG
Cryptosporidium parvum cDNA, clone: XCPa000727, 5' end sequence, XCP Sugano cDNA library.
DK920325.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa001447, 5' end sequence, XCP Sugano cDNA library.
DK920981.1:406-424
TGGATTCAGTTGCCGAAGGTGTTAAGAAAA406TACTGTCCCAATGCCTTTGTCATCTGTATCCACAAACCCATTAG
Cryptosporidium parvum cDNA, clone: XCPa002494, 5' end sequence, XCP Sugano cDNA library.
DK921795.1:404-422
TTTGGATTCAGTTGCCGAGGTGTTAAGATA404TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCCAT
Cryptosporidium parvum cDNA, clone: XCPa002596, 5' end sequence, XCP Sugano cDNA library.
DK921880.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCCATTAGATGTT
Cryptosporidium parvum cDNA, clone: XCPa002633, 5' end sequence, XCP Sugano cDNA library.
DK921915.1:405-423
TTGGATTCAGTCGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa002826, 5' end sequence, XCP Sugano cDNA library.
DK922078.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa002852, 5' end sequence, XCP Sugano cDNA library.
DK922099.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACANACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa003025, 5' end sequence, XCP Sugano cDNA library.
DK922247.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGATA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa003303, 5' end sequence, XCP Sugano cDNA library.
DK922492.1:364-382
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA364TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa003325, 5' end sequence, XCP Sugano cDNA library.
DK922510.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCATTACAT
Cryptosporidium parvum cDNA, clone: XCPa003331, 5' end sequence, XCP Sugano cDNA library.
DK922514.1:403-421
TGGGATTCAGTTGCCGAAGGTGTTAAGAAA403TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa003357, 5' end sequence, XCP Sugano cDNA library.
DK922536.1:406-424
TTGGATTCAGTTGCCGAAGGTGTGAAGAAA406TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa003454, 5' end sequence, XCP Sugano cDNA library.
DK922614.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa003603, 5' end sequence, XCP Sugano cDNA library.
DK922728.1:405-423
TTGGATTCAGTTGCCGAAGCTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCCTTAAATG
Cryptosporidium parvum cDNA, clone: XCPa003606, 5' end sequence, XCP Sugano cDNA library.
DK922731.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACATACCCATTAGATG
Cryptosporidium parvum cDNA, clone: XCPa003672, 5' end sequence, XCP Sugano cDNA library.
DK922790.1:405-423
TTGGATTCCGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGT
Cryptosporidium parvum cDNA, clone: XCPa003699, 5' end sequence, XCP Sugano cDNA library.
DK922813.1:403-421
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA403TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCCTT
Cryptosporidium parvum cDNA, clone: XCPa003905, 5' end sequence, XCP Sugano cDNA library.
DK922998.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACANACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa006394, 5' end sequence, XCP Sugano cDNA library.
DK924866.1:384-402
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA384TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTACATGTTA
Cryptosporidium parvum cDNA, clone: XCPa007298, 5' end sequence, XCP Sugano cDNA library.
DK925590.1:406-424
TGGATTCAGTTGCCCGAAGGTGTTAAGAAA406TACTGTCCCAATGCCTTTGTCATCT
Cryptosporidium parvum cDNA, clone: XCPa009242, 5' end sequence, XCP Sugano cDNA library.
DK926628.1:405-423
TTGGATTCAGTTGCCGAAGGTGTTAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTTA
Cryptosporidium parvum cDNA, clone: XCPa009955, 5' end sequence, XCP Sugano cDNA library.
DK926902.1:405-423
TTGGATTCAGTTGCCGAAGGGGTAAAGAAA405TACTGTCCCAATGCCTTTGTCATCTGTATCACAAACCCATTAGATGTAA
3_Tce_b3v08.
OC316578.1:373771-373789
CGTCCCAAGGCCTTCGAGAGAGAAAGCGCC373771TACTGTCCCAATGCCTTTGTGAGAGCAAGAGCCTACAGTCCCAAGGTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAAGGCATTGGGACAGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAGGCATTGGGACAGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.327 | 0.318 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAGGCATTGGGACAGTA&k=0&no_gap=0&offset=0&limit=50
1.945 | 1.618 | search_minus_done; http://172.18.8.135:50400/match?q=TACTGTCCCAATGCCTTTG&k=0&no_gap=0&offset=0&limit=47
1.967 | 0.021 | cgi_end;

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