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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:22:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 18985 from patent US 7560542.
GP610981.1:185-204
ATAGAGGTGCTTGAAATGGTGCGGGCCTTG185CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 70340 from patent US 7560542.
GP662336.1:94-113
CGACATGTACACCGAATGGTGCGGGCCTTG94CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 59720 from patent US 7569389.
GP693077.1:307-326
CGACATGTACACCGAATGGTGCGGGCCTTG307CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 23996 from patent US 7750207.
GX329921.1:462-481
CGACATGTACACCGAATGGTGCGGGCCTTG462CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 23997 from patent US 7750207.
GX329922.1:457-476
CGACATGTACACCGAATGGTGCGGGCCTTG457CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 24000 from patent US 7750207.
GX329925.1:447-466
CGACATGTACACCGAATGGTGCGGGCCTTG447CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 61638 from patent US 8344211.
GZ681639.1:293-312
CGACATGTACACCGAATGGTGCGGGCCTTG293CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 175970 from Patent EP2090662.
HB826756.1:354-373
CGACATGTACACCGAATGGTGCGGGCCTTG354CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Sequence 175978 from Patent EP2090662.
HB826764.1:462-481
CGACATGTACACCGAATGGTGCGGGCCTTG462CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
945003H11.X1 945 - Mixed adult tissues from Walbot lab, same as 707 (SK) Zea mays cDNA, mRNA sequence.
AW787813.1:318-337
CGACATGTACACCGAATGGTGCGGGCCTTG318CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
945003H11.X3 945 - Mixed adult tissues from Walbot lab, same as 707 (SK) Zea mays cDNA, mRNA sequence.
AW927815.1:324-343
CGACATGTACACCGAATGGTGCGGGCCTTG324CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
za71e05.b50 Maize Glume cDNAs Library Zea mays cDNA clone za71e05 5', mRNA sequence.
BE051002.1:341-360
CGACATGTACACCGAATGGTGCGGGCCTTG341CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
za71e05.g51 Maize Glume cDNAs Library Zea mays cDNA clone za71e05 5', mRNA sequence.
BE051003.1:343-362
CGACATGTACACCGAATGGTGCGGGCCTTG343CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
1000069A10.x2 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence.
BF728906.1:160-179
CGACATGTACACCGAATGGTGCGGGCCTTG160CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGAT
947063H03.y1 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence.
BG517315.1:123-142
CGACATGTACACCGAATGGTGCGGGCCTTG123CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
949067A10.y1 949 - Juvenile leaf and shoot cDNA from Steve Moose Zea mays cDNA, mRNA sequence.
BI595754.1:341-360
CGACATGTACACCGAATGGTGCGGGCCTTG341CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGAT
949067A10.y2 949 - Juvenile leaf and shoot cDNA from Steve Moose Zea mays cDNA, mRNA sequence.
BI674768.1:268-287
CGACATGTACACCGAATGGTGCGGGCCTTG268CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QAG4h12.yg QAG Zea mays cDNA clone QAG4h12, mRNA sequence.
CD979604.1:23-42
ACACCGAATGGTGCGGGCCTTG23CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QAJ2e10.yg QAJ Zea mays cDNA clone QAJ2e10, mRNA sequence.
CD981612.1:23-42
ACACCGAATGGTGCGGGCCTTG23CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QAJ5b09.yg QAJ Zea mays cDNA clone QAJ5b09, mRNA sequence.
CD981934.1:23-42
ACACCGAATGGTGCGGGCCTTG23CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QAP1d12.yg QAP Zea mays cDNA clone QAP1d12, mRNA sequence.
CD988225.1:23-42
ACACCGAATGGTGCGGGCCTTG23CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QAP3c02.yg QAP Zea mays cDNA clone QAP3c02, mRNA sequence.
CD988369.1:82-101
TANTGATTACACCGAATGGTGCGGGCCTTG82CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QAP3h12.yg QAP Zea mays cDNA clone QAP3h12, mRNA sequence.
CD988420.1:24-43
TACACCGAATGGTGCGGGCCTTG24CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QCA20c12.yg QCA Zea mays cDNA clone QCA20c12, mRNA sequence.
CF025753.1:24-43
TACACCGAATGGTGCGGGCCTTG24CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QCA4c09.yg QCA Zea mays cDNA clone QCA4c09, mRNA sequence.
CF026200.1:23-42
ACACCGAATGGTGCGGGCCTTG23CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QCC4g10.yg QCC Zea mays cDNA clone QCC4g10, mRNA sequence.
CF029132.1:98-117
CGACATGTACACCGAATGGTGCGGGCCTTG98CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QCC5h11.yg QCC Zea mays cDNA clone QCC5h11, mRNA sequence.
CF029209.1:23-42
ACACCGAATGGTGCGGGCCTTG23CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QCC7g07.yg QCC Zea mays cDNA clone QCC7g07, mRNA sequence.
CF029330.1:98-117
CGACATGTACACCGAATGGTGCGGGCCTTG98CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
QCC8c06.yg QCC Zea mays cDNA clone QCC8c06, mRNA sequence.
CF029357.1:98-117
CGACATGTACACCGAATGGTGCGGGCCTTG98CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
3530_1_201_1_H02.y_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence.
CO530613.1:309-328
CGACATGTACACCGAATGGTGCGGGCCTTG309CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFb0130M12.r ZM_BFb Zea mays cDNA 5', mRNA sequence.
DT944210.1:326-345
CGACATGTACACCGAATGGTGCGGGCCTTG326CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFb0192N14.r ZM_BFb Zea mays cDNA 5', mRNA sequence.
DV512263.1:260-279
CGACATGTACACCGAATGGTGCGGGCCTTG260CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
1000069-A10.GAD10-F UGI-Reseq Zea mays cDNA, mRNA sequence.
DV550919.1:385-404
CGACATGTACACCGAATGGTGCGGGCCTTG385CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFb0384N09.r ZM_BFb Zea mays cDNA 5', mRNA sequence.
EB822821.1:9-28
GGGCCTTG9CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFc0043I16.r ZM_BFc Zea mays cDNA clone ZM_BFc0043I16 5', mRNA sequence.
EC898598.2:356-375
CGACATGTACACCGAATGGTGCGGGCCTTG356CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFc0115J03.r ZM_BFc Zea mays cDNA clone ZM_BFc0115J03 5', mRNA sequence.
EE045742.2:420-439
CGACATGTACACCGAATGGTGCGGGCCTTG420CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFc0171L11.r ZM_BFc Zea mays cDNA clone ZM_BFc0171L11 5', mRNA sequence.
EE186349.2:319-338
CGACATGTACACCGAATGGTGCGGGCCTTG319CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
ZM_BFc0009N03.f ZM_BFc Zea mays cDNA clone ZM_BFc0009N03 3', mRNA sequence.
EE285900.2:329-348
CGACATGTACACCGAATGGTGCGGGCCTTG329CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
22848825 CERES-505 Zea mays cDNA clone 1610197 5', mRNA sequence.
FK952201.1:342-361
CGACATGTACACCGAATGGTGCGGGCCTTG342CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
15203270 CERES-CN31 Zea mays cDNA clone 1501446 5', mRNA sequence.
FK952202.1:353-372
CGACATGTACACCGAATGGTGCGGGCCTTG353CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
2764268 CERES-226 Zea mays cDNA clone 462801 5', mRNA sequence.
FK952204.1:293-312
CGACATGTACACCGAATGGTGCGGGCCTTG293CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
2024137 CERES-226 Zea mays cDNA clone 423508 5', mRNA sequence.
FK952205.1:292-311
CGACATGTACACCGAATGGTGCGGGCCTTG292CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
16642220 CERES-503 Zea mays cDNA clone 1564291 5', mRNA sequence.
FK952207.1:396-415
CGACATGTACACCGAATGGTGCGGGCCTTG396CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
1636094 CERES-214 Zea mays cDNA clone 370691 5', mRNA sequence.
FK952208.1:342-361
CGACATGTACACCGAATGGTGCGGGCCTTG342CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
16662354 CERES-504 Zea mays cDNA clone 1584425 5', mRNA sequence.
FK952209.1:383-402
CGACATGTACACCGAATGGTGCGGGCCTTG383CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
21531390 CERES-502 Zea mays cDNA clone 1588796 5', mRNA sequence.
FK952210.1:342-361
CGACATGTACACCGAATGGTGCGGGCCTTG342CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
15277654 CERES-502 Zea mays cDNA clone 1524519 5', mRNA sequence.
FK952214.1:229-248
CGACATGTACACCGAATGGTGCGGGCCTTG229CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
21532270 CERES-502 Zea mays cDNA clone 1589580 5', mRNA sequence.
FK952216.1:366-385
CGACATGTACACCGAATGGTGCGGGCCTTG366CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
2935723 CERES-227 Zea mays cDNA clone 487882 5', mRNA sequence.
FK952218.1:309-328
CGACATGTACACCGAATGGTGCGGGCCTTG309CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
15279794 CERES-502 Zea mays cDNA clone 1526612 5', mRNA sequence.
FK952219.1:393-412
CGACATGTACACCGAATGGTGCGGGCCTTG393CAAAGTGATGGCTCCGAAATTCCAGGAAATGTCTGAGAAGAACCTGGATG
1504928 CERES-196 Zea mays cDNA clone 318289 5', mRNA sequence.
FK952220.1:341-360
CGACATGTACACCGAATGGTKCGGGCCTTG341CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
1628639 CERES-222 Zea mays cDNA clone 363236 5', mRNA sequence.
FK952221.1:332-351
CGACATGTACACCGAATGGTGCGGGCCTTG332CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGACCTGGA
2956520 CERES-227 Zea mays cDNA clone 498433 5', mRNA sequence.
FK952222.1:309-328
CGACATGTACACCGAATGGTGCGGGCCTTG309CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
16642087 CERES-503 Zea mays cDNA clone 1564158 5', mRNA sequence.
FK952223.1:396-415
CGACATGTACACCGAATGGTGCGGGCCTTG396CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
25552060 CERES-502 Zea mays cDNA clone 1692028 5', mRNA sequence.
FK952225.1:396-415
CGACATGTACACCGAATGGTGCGGGCCTTG396CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
15273145 CERES-502 Zea mays cDNA clone 1520100 5', mRNA sequence.
FL296222.1:376-395
CGACATGTACACCGAATGGTGCGGGCCTTG376CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGGAT
1632028 CERES-214 Zea mays cDNA clone 366625 5', mRNA sequence.
FL296223.1:378-397
CGACATGTACACCGAATGGTGCGGGCCTTG378CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
25547694 CERES-502 Zea mays cDNA clone 1687662 5', mRNA sequence.
FL296224.1:354-373
CGACATGTACACCGAATGGTGCGGGCCTTG354CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
1418931 CERES-197 Zea mays cDNA clone 305037 5', mRNA sequence.
FL296227.1:375-394
TCGACATGTACACCGAATGGTCGGGCCTTG375CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGTAAGAACCTGGAT
TSA: Zea mays contig58671, mRNA sequence.
EZ057549.1:14-33
GGTGCGGGCCTTG14CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.763.C1.
FX298108.1:382-401
TGATATGTTCACTCAATGGTGTGGTCCTTG382CAAAGTGATGGCTCCGAAATATGAAAAGTTAGCGCAGGAGAAACTCGATG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.763.C2.
FX298109.1:489-508
TGATATGTTCACTCAATGGTGTGGTCCTTG489CAAAGTGATGGCTCCGAAATATGAAAAGTTAGCGCAGGAGAAACTCGATG
OGBAC02TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0116B03, genomic survey sequence.
BZ640427.1:79-98
CATTAACAATATTTGCAGGTGCGGGCCTTG79CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
PUHIU94TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa461O19, genomic survey sequence.
CC414310.1:549-568
CATTAACAATATTTGCAGGTGCGGGCCTTG549CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGGAACCTGGAT
OGKAZ72TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0335K24, genomic survey sequence.
CC612312.1:161-180
CATTAACAATATTTGCAGGTGCGGGCCTTG161CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
PUIFZ73TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0574N02, genomic survey sequence.
CG120750.1:576-595
CATTAACAATATTTGCAGGTGCGGGCCTTG576CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Zea mays cultivar B73 chromosome 10 clone CH201-478O6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
AC199620.6:60693-60712
CATTAACAATATTTGCAGGTGCGGGCCTTG60693CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Zea mays cultivar LT2357 chromosome 10.
CP116748.1:60793180-60793199
CATTAACAATATTTGCAGGTGCGGGCCTTG60793180CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Zea mays clone 94236 mRNA sequence.
DQ246005.1:376-395
CGACATGTACACCGAATGGTGCGGGCCTTG376CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Zea mays clone 1538632 mRNA sequence.
EU955595.1:305-324
CGACATGTACACCGAATGGTGCGGGCCTTG305CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Zea mays clone 290305 thioredoxin F-type mRNA, complete cds.
EU965957.1:462-481
CGACATGTACACCGAATGGTGCGGGCCTTG462CAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATG
Daphnia pulex isolate KAP106 chromosome 6.
CP087232.1:2806404-2806423
CGACTTCTACCGACTGTTTACGGCTGGACG2806404CAAAGTGATGGCTCCGAAATGTTTGAAAGTTAATAATATAAAGGCCCAAC
Daphnia pulex isolate KAP4 chromosome 6.
CP087244.1:2838330-2838349
CGACTTCTACCGACTGTTTACGGCTGGACG2838330CAAAGTGATGGCTCCGAAATGTTTGAAAGTTAATAATAAAAAGGCTCAAC
Daphnia pulex isolate STM2 chromosome 6.
CP087256.1:2894589-2894608
CGACTTCTACCGACTGTTTACGGTTGGACG2894589CAAAGTGATGGCTCCGAAATGTTTGAAAGTTAATAATAAAAAGGCTCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAAGTGATGGCTCCGAAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAGTGATGGCTCCGAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.789 | 2.780 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAGTGATGGCTCCGAAAT&k=0&no_gap=0&offset=0&limit=50
2.854 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTCGGAGCCATCACTTTG&k=0&no_gap=0&offset=0&limit=0
2.854 | 0.000 | cgi_end;

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