GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:00:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Camellia sinensis Singletons43930.Casi mRNA sequence.
HP756577.1:140-159
TAAACCTTAACAGGTGACTGTTGTGTAAAT140CAAATAGAGGCAATTCACCAACCCACAATTACAGAGAGAGAGAGAGAGAG
Scyliorhinus canicula genome assembly, chromosome: 4.
LR744033.1:137502406-137502425
TACTGATCACAGACAGGTCCTCGGAGAGGC137502406TGGTGAATTGCCTCTATTTGTAGTGGAAACGTTTCTCCGACCCCTTGATG
Camellia sinensis mRNA, clone: ML25C04, 5' end sequence, expressed in mature leaves.
FS947390.1:714-733
TCTGTAGTATGATTGTTTGTAATTGTGGGT714TGGTGAATTGCCTCTATTTGATTTACACAACAGTCACCTGTTAAGGTTTA
EST2758 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08010904-OUYI_CHAG_31_38.M13+_F05, mRNA sequence.
GE652431.1:780-799
CTCTCTCTCTCTCTCTCTGTAATTGTGGGT780TGGTGAATTGCCTCTATTTGATTTACACAACAGTCACCTGTTAAGGGTTT
Chionographis japonica genome assembly, chromosome: 5.
OX393553.1:9429617-9429636
AAGCGGGCTTGACCACTTTCCAATAACTTG9429617TGGTGAATTGCCTCTATTTGCTGCAGAACACCTACCACTGCCCAGTGTTG
Viscum album genome assembly, chromosome: 1_6.
OY728124.1:51080533-51080552
GGGGCAGCAGGGGCAGGCACAAATTCCCCT51080533TGGTGAATTGCCTCTATTTGACCCAAACCATCCTACCCATTCAGACAGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAATAGAGGCAATTCACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAATAGAGGCAATTCACCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATAGAGGCAATTCACCA&k=0&no_gap=0&offset=0&limit=50
0.335 | 0.185 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTGAATTGCCTCTATTTG&k=0&no_gap=0&offset=0&limit=49
0.339 | 0.003 | cgi_end;

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