GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 10:24:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Plectropomus leopardus DNA, chromosome 10, nearly complete sequence.
AP022709.1:8170423-8170442
CCACTGCTGCTTCAGTCTACTTCTTCACCT8170423CAAATCGCCCTCTCACTCTCCTTGACCTTCTCTTTTCCTTATTCGTATTC
Gadus morhua genome assembly, chromosome: 19.
LR633961.1:20833083-20833102
GAGCGCAACGGATGGTGAGAGAGAGAGAGA20833083GAGAGTGAGAGGGCGATTTGTGTATATGTGTGTGTGTGTGTGTGTATGCG
Medicago truncatula clone mth2-27f3, complete sequence.
AC133780.33:79489-79508
ATCAAGGAAGGCTAGGGCTGATACGAGAAA79489GAGAGTGAGAGGGCGATTTGTTAAGGCAACTGATGATATTCAAGAAGGAT
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:18182906-18182925
ATCAAGGAAGGCTAGGGCTGATACGAGAAA18182906GAGAGTGAGAGGGCGATTTGTTAAGGCGAGTGATACAAATGATAATCAAG
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:19079903-19079922
ATCAAGGAAGGCTAGGGCTGATACGAGAAA19079903GAGAGTGAGAGGGCGATTTGTTAAGGCGAGTGATACAAATGATAATCAAG
Medicago truncatula cultivar Jemalong6 CONSTANS-like protein gene, partial cds.
GU080215.1:4979-4998
ATCAAGGAAGGCTAGGGCTGATACGAGAAA4979GAGAGTGAGAGGGCGATTTGTTAAGGCAAC
Medicago truncatula cultivar DZA315.16 CONSTANS-like protein gene, exons 1 through 4 and partial cds.
GU080216.1:4984-5003
ATCAAGGAAGGCTAGGGCTGATACGAGAAA4984GAGAGTGAGAGGGCGATTTGTTAAGGCAAC
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:18890855-18890874
ATCAAGGAAGGCTAGGGCTGATACGAGAAA18890855GAGAGTGAGAGGGCGATTTGTTAAGGCAAGTGATACAAGTGATAATCAAG
Trifolium fragiferum genome assembly, chromosome: 5.
OX940793.1:32010710-32010729
ATCAAGGAAGGCTAGGGCTGATACGAGAAA32010710GAGAGTGAGAGGGCGATTTGTTAAGGCAAGTGATACAAGTGATAATCAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAATCGCCCTCTCACTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAATCGCCCTCTCACTCTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.092 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATCGCCCTCTCACTCTC&k=0&no_gap=0&offset=0&limit=50
0.120 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGTGAGAGGGCGATTTG&k=0&no_gap=0&offset=0&limit=49
0.125 | 0.005 | cgi_end;

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