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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:57:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR4BA37JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV574124.1:342-363
TGGGAAACATACACCCAGTAGGGAAAGGAG342CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1B155JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW721297.1:342-363
TGTGAAACATACACCCAGTAGGGAAAGGAG342CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1AT39JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW721736.1:341-362
TGTGAAACATACACCCAGTAGGGAAAGGAG341CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RR1CE20JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX752520.1:352-373
TGTGAAACATACACCCAGTAGGGAAAGGAG352CAAATGACTTGGCACATCCTTGCTTTTTAATCTCCACATCATCAGACATCAC
RR4BY05JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX775103.1:371-392
TGTGAAACATACACCCAGTAGGGAAAGGAG371CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RR4CL72JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX776802.1:357-378
TGTGAAACATACACCCAGTAGGGAAAGGAG357CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1C489JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX892344.1:354-375
TGTGAAACATACACCCAGTAGGGAAAGGAG354CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS2C237JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900082.1:363-384
TGTGAAACATACACCCAGTAGGGAAAGGAG363CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RR4EF11JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY921007.1:360-381
TGTGAAACATACACCCAGTAGGGAAAGGAG360CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS2DA56JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY933914.1:446-467
TCTTTTTGCACTTACCAGTAGGGAAAGGAG446CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1FP06JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD568004.1:360-381
TGTGAAACATACACCCAGTAGGGAAAGGAG360CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1FR74JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD568189.1:361-382
TGTGAAACATACACCCAGTAGGGAAAGGAG361CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS2FR22JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575319.1:345-366
TGTGAAACATACACCCAGTAGGGAAAGGAG345CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1G144JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD934736.1:361-382
TGTGAAACATACACCCAGTAGGGAAAGGAG361CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS1GV40JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD936716.1:452-473
TCTTTTTGCACTTACCAGTAGGGAAAGGAG452CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
RS2H534JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD944708.1:388-409
TGTGAAACATACACCCAGTAGGGAAAGGAG388CAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATCATCAGACATCAC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:44268735-44268756
GTGTCTTCGCCTTACCAGTAGGGAAAGGAG44268735CAAATGACTTGGCACATCCTTGCTTTATGATCTTCACATCATCAGACATCAC
RR4BA37TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV569622.1:601-622
GTGATGTCTGATGATGTGAAGATTATAAAG601CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1B155TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW717273.1:38-59
GTGATGTCTGATGATGTGAAGATTATAAAG38CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1AT39TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW718110.1:607-628
GTGATGTCTGATGATGTGAAGATTATAAAG607CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RR1CE20TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748646.1:475-496
GTGATGTCTGATGATGTGGAGATTAAAAAG475CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RR4BY05TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770984.1:604-625
GTGATGTCTGATGATGTGAAGATTATAAAG604CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RR4C568TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX771598.1:164-185
GTGATGTCTGATGATGTGAAGATTATAAAG164CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RR4CL72TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX772951.1:565-586
GTGATGTCTGATGATGTGAAGATTATAAAG565CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1C489TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX888408.1:38-59
GTGATGTCTGATGATGTGAAGATTATAAAG38CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS2C237TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896101.1:604-625
GTGATGTCTGATGATGTGAAGATTATAAAG604CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1FP06TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD564545.1:608-629
GTGATGTCTGATGATGTGAAGATTATAAAG608CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1FR74TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD564795.1:607-628
GTGATGTCTGATGATGTGAAGATTATAAAG607CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS2FR22TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD571493.1:604-625
GTGATGTCTGATGATGTGAAGATTATAAAG604CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1G144TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD938331.1:600-621
GTGATGTCTGATGATGTGAAGATTATAAAG600CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS1GS51TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940706.1:483-504
GTGATGTCTGATGATGTGAAGATTATAAAG483CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
RS2H534TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD949007.1:610-631
GTGATGTCTGATGATGTGAAGATTATAAAG610CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2705.
FX751352.1:606-627
GTGATGTCTGATGATGTGAAGATTATAAAG606CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA
TSA: Raphanus sativus RS27541 mRNA sequence.
JT812088.1:275-296
TTGATGTCTGATGATGTGAAGATTATTAAG275CAAGGATGTGCCAAGTCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAATGACTTGGCACATCCTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAATGACTTGGCACATCCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.296 | 1.288 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATGACTTGGCACATCCTTG&k=0&no_gap=0&offset=0&limit=50
2.337 | 1.041 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGATGTGCCAAGTCATTTG&k=0&no_gap=0&offset=0&limit=33
2.348 | 0.011 | cgi_end;

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