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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:20:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Capsicum annuum MGMT_Contig3208, mRNA sequence.
JW053452.1:1453-1473
TCTCGGCTGAATATCCCCTAATAGAGACTG1453CAAATGTTCTAGGCCCATTCCCATGTTTGTGAAAATATCCTCTAGACTCGG
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:264456495-264456515
TCTCGGCTGAATATCTCCTAATAGAGACTG264456495CAAATGTTCTAGGCCCATTCCCATGTTTGTGAAAATATCCTCTAGACTCGG
Solanum tuberosum cultivar P8 chromosome 12.
CP046681.1:1145991-1146011
TCTCGGCWGAATATCTCCTAATAGAGACTG1145991CAAATGTTCTAGGCCCATTCCCATGTTTGTGAAAATATCCTCCAKACTCAG
Solanum tuberosum cultivar MSH/14-112 chromosome 12.
CP046697.1:1146031-1146051
TCTCGGCWGAATATCTCCTAATAGAGACTG1146031CAAATGTTCTAGGCCCATTCCCATGTTTGTGAAAATATCCTCCAKACTCAG
Solanum pinnatisectum cultivar CGN17745 chromosome 12.
CP047558.1:1145567-1145587
TCTCGGCTGAATATCTCCTAATAGAGACTG1145567CAAATGTTCTAGGCCCATTCCCATGTTTGTGAAAATATCCTCCATACTCAG
Solanum tuberosum cultivar Solyntus chromosome 12.
CP055245.1:1293489-1293509
TCTCGGCAGAATATCTCCTAATAGAGACTG1293489CAAATGTTCTAGGCCCATTCCCATGTTTGTGAAAATATCCTCCAGACTCAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 4.
CP124716.1:147852075-147852095
TCTCGGCTGAATATCTCCTAATAGAGACTC147852075CAAATGTTCTAGGCCCATTCCCATGTTTATGAAAATATCCTCTAGACTCAG
EST394451 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA13H22 similar to ethylene-responsive elongation factor EF-Ts precursor {Lycopersicon esculentum}, mRNA sequence.
BE341622.1:259-279
CTGAGTCTGGAGGATATTTTCACAAACATG259GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCT
EST395769 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA22A18, mRNA sequence.
BE342925.1:251-271
CTGAGTCTGGAGGATATTTTCACAAACATG251GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
EST395771 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA22C2, mRNA sequence.
BE342927.1:234-254
CTGAGTCTGGAGGATATTTTCACAAACATG234GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
EST425705 potato leaves and petioles Solanum tuberosum cDNA clone cSTB17G6 5' sequence, mRNA sequence.
BE921936.1:290-310
CTGAGTCTGGAGGATATTTTCACAAACATG290GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
EST443267 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA38C1 5' sequence, mRNA sequence.
BF186980.1:261-281
CTGAGTCTGGAGGATATTTTCACAAACATG261GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
EST463477 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC8L5 5' sequence, mRNA sequence.
BG098958.1:265-285
CTGAGTCTGGAGGATATTTTCACAAACATG265GGAATGGGCCTAGAACATTTGCAGTT
EST595247 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI13J6 5' end, mRNA sequence.
BQ046129.1:34-54
CTGAGTCTGGAGGATATTTTCACAAACATG34GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
EST603412 mixed potato tissues Solanum tuberosum cDNA clone STMDV65 5' end, mRNA sequence.
BQ117836.2:251-271
CTGAGTCTGGAGGATATTTTCACAAACATG251GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
EST604888 mixed potato tissues Solanum tuberosum cDNA clone STMEI82 3' end, mRNA sequence.
BQ119312.1:309-329
CTGAGTCTGGAGGATATTTTCACAAACATG309GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
KS12032G10 KS12 Capsicum annuum cDNA, mRNA sequence.
CA524091.1:170-190
CCGAGTCTACAGGATATTTCCACAATCATG170GGAATGGGCCTAGAACATTTGCAGTCTCTATTACGAGATATTCAGCCGAGA
18321 Swollen Stolon Solanum tuberosum cDNA, mRNA sequence.
CK718311.1:251-271
CTGAGTCTGGAGGATATTTTCACAAACATG251GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
32582 In vitro Root Solanum tuberosum cDNA, mRNA sequence.
CK861498.1:255-275
CTGAGTCTGGAGGATATTTTCACAAACATG255GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
59832.1 In vitro Root Solanum tuberosum cDNA clone 59832 5', mRNA sequence.
CO502563.1:231-251
CTGAGTCTGGAGGATATTTTCACAAACATG231GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTGCCGAGA
Solanum melongena mRNA, clone: CAL04N12, 5'end, expressed in callus at 3d after subculture.
FS010149.1:248-268
CTGAGCCTAGAGGATATTTTCACAAACATG248GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCAGCCGAGA
Solanum melongena mRNA, clone: SmFL12H24, 5'end.
FS074563.1:248-268
CTGAGCCTAGAGGATATTTTCACAAACATG248GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCAGCCGAGA
Solanum torvum mRNA, clone: TVR37M08, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS126331.1:244-264
CTGAGTCTAGAGGATATTTTCACAAACATG244GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCAGCCGAGA
TSA: Capsicum annuum MGMT_Contig33634 mRNA sequence.
JW083878.1:332-352
CCGAGTCTAGAGGATATTTTCACAAACATG332GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGGGATATTCAGCCGAGA
TSA: Capsicum annuum MAVs_77401, mRNA sequence.
JW163758.1:295-315
CCGAGTCTAGAGGATATTTTCACAAACATG295GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGGGATATTCAGCCGAGA
TSA: Capsicum annuum MA_CLC_22203, mRNA sequence.
JW164718.1:332-352
CCGAGTCTAGAGGATATTTTCACAAACATG332GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGGGATATTCAGCCGAGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:1740371-1740391
CCGAGTCTAGAGGATATTTTCACAAACATG1740371GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCAGCCGAGA
Solanum verrucosum cultivar 11H23 chromosome 12.
CP133623.1:54774377-54774397
CTGAGTCTGGAGGATATTTTCACAAACATG54774377GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCTACCGAGA
Solanum dulcamara genome assembly, chromosome: 10.
OX359261.1:6367963-6367983
CTGAGTCTAGAGGATATTTTCAGAAACATG6367963GGAATGGGCCTAGAACATTTGCAGTCTCTATTAGGAGATATTCAGCCGAAA
Dolomedes plantarius genome assembly, chromosome: 1.
OU015490.1:140631326-140631346
AGTTTAAAAAAATAAGCTTTTAAATAATAT140631326GGAATGGGCCTAGAACATTTGGAAAAAATGGTACACAAATTGAAAAAAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAATGTTCTAGGCCCATTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAATGTTCTAGGCCCATTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.174 | 0.165 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATGTTCTAGGCCCATTCC&k=0&no_gap=0&offset=0&limit=50
0.892 | 0.718 | search_minus_done; http://172.18.8.135:50400/match?q=GGAATGGGCCTAGAACATTTG&k=0&no_gap=0&offset=0&limit=43
0.907 | 0.015 | cgi_end;

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