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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:05:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRCS09_12D12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12D12-G23-1-6.b, mRNA sequence.
CX047153.1:639-658
TTTGAACACCACAAGGCATTGGACATCCCA639CAAATTTGTGGCCTGAGACACTCACACTTCCAATGGGTTTCTTAAAAGAA
UCRCS09_1A03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-1A03-A5-1-5.b, mRNA sequence.
CX048206.1:639-658
TTTGAACACCACAAGGCATTGGACATCCCA639CAAATTTGTGGCCTGAGACACTCACACTTCCAATGGGTTTCTTAAAAGAA
UCRCS09_7D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7D06-H12-1-4.b, mRNA sequence.
CX053660.1:677-696
TTTGAACACCACAAGGCATTGGACATCCCA677CAAATTTGTGGCCTGAGACACTCACACTTCCAATGGGTTTCTTAAAAGAA
UCRCS08_55H07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-55H07-P13-1-4.b, mRNA sequence.
CX077322.1:646-665
TTTGAACACCACAAGGCATTGGACATCCCA646CAAATTTGTGGCCTGAGACACTCACACTTCCAATGGGTTTCTTAAAAGAA
UCRCS08_5F12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F12-K23-1-6.g, mRNA sequence.
CX077899.1:679-698
TTTGAACACCACAAGGCATTGGACATCCCA679CAAATTTGTGGCCTGAGACACTCACACTTCCAATGGGTTTCTTAAAAGAA
Camelina sativa cultivar CO46 chromosome 14.
CP131544.1:25147863-25147882
TCTGAACACCACAAGGCATTGGACAGCCAA25147863CAAATTTGTGGCCTGAGACACTCACACTTCCAATCGGTTTATTGAACGTG
Camelina sativa cultivar CO46 chromosome 17.
CP131547.1:30418164-30418183
TCTGAACACCACAAGGCATTGGACACCCAA30418164CAAATTTGTGGCCTGAGACACTCACACTTCCAATCGGTTTATTGAACGTG
Capsella bursa-pastoris isolate WGS_leaf chromosome 1.
CP144183.1:19604308-19604327
TCTGAACACCACAAGGCATTGGACACCCGA19604308CAAATTTGTGGCCTGAGACACTAACACTCCCAATCGGTTTATTGAACGTG
Capsella bursa-pastoris isolate WGS_leaf chromosome 9.
CP144191.1:22029702-22029721
TCTGAACACCACAAGGCATTGGACACCCGA22029702CAAATTTGTGGCCTGAGACACTAACACTCCCAATCGGTTTATTGAACGTG
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:6442429-6442448
TTTGAACACCACAAGGCATTGGACATCCCA6442429CAAATTTGTGGCCTGAGACACTCACACTTCCAATGGGTTTCTTAAAAGAA
UCRCS08_5F12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F12-K23-1-5.b, mRNA sequence.
CX077898.1:660-679
TTCTTTTAAGAAACCCATTGGAAGTGTGAG660TGTCTCAGGCCACAAATTTGTGGGATGTCCAATGCCTTGTGGTGTTCAAA
Citrus unshiu mRNA, clone: BFC4A21, 5'-end sequence, expressed in flavedo.
DC885773.1:489-508
TTCTTTTAAGAAACCCATTGGAAGTGTGAG489TGTCTCAGGCCACAAATTTGTGGGATGTCCAATGCCTTGTGGTGTTCAAA
IC0AAA16BG03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY265123.1:898-917
TCTTTTAAGAAACCCATTGGNAAGTGTGAG898TGTCTCAGGCCACAAATTTGTGGGATGTCCNATGCCCTGTGGTGGTCAAA
IC0AAA57CH11RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY282797.1:882-901
TTCTTTTAAGAAACCCATTGGAAGTGTGAG882TGTCTCAGGCCACAAATTTGTGGGATGTCCCATGCCCTTGTGGTGTTC
CA26-C1-002-072-A10-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY846442.1:400-419
TTCTTTTAAGAAACCCATTGGAAGTGTGAG400TGTCTCAGGCCACAAATTTGTGGGATGTCCAATGCCTTGTGGTGTTCAAT
Daucus carota subsp. sativus cultivar DH1 chromosome 1.
CP093343.1:27068352-27068371
GTCATTTAAAAAACCTATTGGAAGTGTCAG27068352TGTCTCAGGCCACAAATTTGTTGGGTGCCCAATGCCTTGTGGTGTCCAGA
Daucus carota isolate Kuroda chromosome 1.
CP125301.1:27319778-27319797
GTCATTCAAAAAACCTATTGGAAGTGTCAG27319778TGTCTCAGGCCACAAATTTGTTGGGTGCCCAATGCCTTGTGGTGTCCAGA
Sherardia arvensis genome assembly, chromosome: 1.
OX415235.1:20910258-20910277
TTCTTGAGTCATGAAATTTTAAACGGCACC20910258TGTCTCAGGCCACAAATTTGGGCCAAAAAATGGTTTTTCAGCATCAGGAT
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:2263751-2263770
TTCTTTTAAGAAACCCATTGGAAGTGTGAG2263751TGTCTCAGGCCACAAATTTGTGGGATGTCCAATGCCTTGTGGTGTTCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAATTTGTGGCCTGAGACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAATTTGTGGCCTGAGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.402 | 0.393 | search_plus_done; http://172.18.8.135:50400/match?q=CAAATTTGTGGCCTGAGACA&k=0&no_gap=0&offset=0&limit=50
0.795 | 0.393 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCTCAGGCCACAAATTTG&k=0&no_gap=0&offset=0&limit=40
0.801 | 0.006 | cgi_end;

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