GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 16:00:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Orthosia incerta genome assembly, chromosome: Z.
OX411741.1:2774186-2774205
CCGGTTTTACACTTTGTACCTACCTACCAA2774186CAACAAGGTACATTCTCATTCAAGGTACACAAGTCTTTTCTGCTCGAGAA
Anopheles arabiensis genome assembly, chromosome: 2.
OZ001348.1:86510049-86510068
ATGTGAGATTCAAACCTTTCAATAGCAGCA86510049CAACAAGGTACATTCTCATTATCACCACCATTGAAGGACCCACTGAGGTG
Pinus sylvestris EST, clone WZ0APSBC3YP01NM1.
HE638256.1:81-100
CCAGACCTCTTCTTCCCAAAAAAATATTAC81AATGAGAATGTACCTTGTTGGATTCTGATATTGAATTGGTGAAGCTCAGG
Agrostemma githago genome assembly, chromosome: 9.
OY288247.1:67481559-67481578
TTGTAGGAAATAAGGATGCCTAAATATTTA67481559AATGAGAATGTACCTTGTTGAAACCCTGAAATCTCTCTAATGTTATTCTG
Cerceris rybyensis genome assembly, chromosome: 2.
OU342790.1:27224591-27224610
TGCGTGATCTAGCGTTTTTGGAATCGGAGG27224591AATGAGAATGTACCTTGTTGCTTACTGCAGTGGCAAGTTGTAGTTGTAGG
Lasius fuliginosus genome assembly, chromosome: 5.
OX424447.1:13165177-13165196
TCTCAAGCATAGATGATATCCATAGATAGA13165177AATGAGAATGTACCTTGTTGTATTTTCCTTTATCCTTTTAGGAGATTTCG
Watersipora subatra genome assembly, chromosome: 1.
OY755158.1:68732242-68732261
TGAGAGATATTTAAAACTTGATTCCAGTAA68732242AATGAGAATGTACCTTGTTGTTGTCCAAAGAGATAAGAGGCCGTTCTTTC
Mytilus edulis genome assembly, chromosome: 5.
OY782960.1:63108364-63108383
AAATCAATTATTTCACTTCATTATGTTCAT63108364AATGAGAATGTACCTTGTTGTAGAGTATGAATGATTCATCAATTGTGAAA
Pyrausta purpuralis genome assembly, chromosome: 3.
OZ001644.1:22879929-22879948
CATCATAAAATTACTTTTAATCGAAAAATC22879929AATGAGAATGTACCTTGTTGCTGGTCATTCGGACTTACGAGTACTCTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAACAAGGTACATTCTCATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACAAGGTACATTCTCATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.191 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=CAACAAGGTACATTCTCATT&k=0&no_gap=0&offset=0&limit=50
0.378 | 0.186 | search_minus_done; http://172.18.8.135:50400/match?q=AATGAGAATGTACCTTGTTG&k=0&no_gap=0&offset=0&limit=48
0.383 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).