GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:03:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Porphyra yezoensis cDNA clone:PM069c06_r, 5' end.
AV436274.1:94-113

CGCTGACGCGGCGGACGGCAGCCGCGGCAT94CAACAGGAGCAGTGGTCGTAGCAGCAATAGCATTAATGGCAGTAGCAGCA

Scyliorhinus canicula genome assembly, chromosome: 1.
LR744030.1:170819217-170819236

TGAACGATGGTATCCCTTCGGAGTTGATAT170819217TACGACCACTGCTCCTGTTGATATATAGGCAAATGACCTGGCGTTAATAT

Nannobrachium achirus genome assembly, chromosome: 16.
OY997653.1:25400664-25400683

CTGGATTTAAGTTGCCTGGGTGCTGCCCCT25400664TACGACCACTGCTCCTGTTGTGCAAATGGGGACCAAATAATAATAATGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.113 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=CAACAGGAGCAGTGGTCGTA&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TACGACCACTGCTCCTGTTG&k=0&no_gap=0&offset=0&limit=49
0.149 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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