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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:50:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfrs3135B12_e7484.b1 Apple_EST_Mdfrs Malus domestica cDNA 3' similar to sp|Q9M4G4|PGMU_SOLTU Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) emb|CAB93681.1| cytosolic phosphoglucomutase
GO567478.1:516-537
GATCCTTGTACTCAAATTCATCGGCGTTGA516CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCTTGTTGACTTCAGA
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:1555358-1555379
GATCCTTGTACTCAAATTCATCGGCGTTGA1555358CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:1528008-1528029
GATCCTTGTACTCAAATTCATCGGCGTTGA1528008CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:1982227-1982248
GATCCTTGTACTCAAATTCATCGGCGTTGA1982227CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:1573308-1573329
GATCCTTGTACTCAAATTCATCGGCGTTGA1573308CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:1450306-1450327
GATCCTTGTACTCAAATTCATCGGCGTTGA1450306CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:1528484-1528505
GATCCTTGTACTCAAATTCATCGGCGTTGA1528484CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus domestica genome assembly, chromosome: 16.
OU696692.1:1566413-1566434
GATCCTTGTACTCAAATTCATCGGCGTTGA1566413CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus domestica genome assembly, chromosome: 16.
OU744557.1:1569476-1569497
GATCCTTGTACTCAAATTCATCGGCGTTGA1569476CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus domestica genome assembly, chromosome: 16.
OU744968.1:1565921-1565942
GATCCTTGTACTCAAATTCATCGGCGTTGA1565921CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus domestica genome assembly, chromosome: 16.
OU745006.1:1576575-1576596
GATCCTTGTACTCAAATTCATCGGCGTTGA1576575CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:1924208-1924229
GATCCTTGTACTCAAATTCATCGGCGTTGA1924208CAACATTGGAAACATCAGAGTGTAAGCCCTTCACAATCCTGTATAAATGAGC
Sequence 5270 from patent US 10760088.
MV635009.1:568-589
TCTGAAGTCAACAAGATTGTGAAGGGAATA568CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Sequence 7089 from patent US 10760088.
MV636828.1:1575-1596
TCTGAAGTCAACAAGATTGTGAAGGGCTTA1575CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Sequence 5270 from patent US 11111499.
MY426892.1:568-589
TCTGAAGTCAACAAGATTGTGAAGGGAATA568CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Sequence 7089 from patent US 11111499.
MY428711.1:1575-1596
TCTGAAGTCAACAAGATTGTGAAGGGCTTA1575CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfw2039j13.y1 Mdfw Malus domestica cDNA clone Mdfw2039j13 5' similar to TR:Q9XFT0 Q9XFT0 CYTOSOLIC PHOSPHOGLUCOMUTASE, mRNA sequence.
CN581541.1:100-121
TCTGAAGTCAACAAGATTGTGAAGGGCTTA100CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
020829AARA011196HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA011196, mRNA sequence.
CN877321.1:235-256
TCTGAAGTCAACAAGATTGTGAAGGGCTTA235CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
020829AARA011454HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA011454, mRNA sequence.
CN877460.1:234-255
TCTGAAGTCAACAAGATTGTGAAGGGCTTA234CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfw2054i01.y1 Mdfw Malus domestica cDNA clone Mdfw2054i01 5' similar to TR:Q9ZSQ4 Q9ZSQ4 CYTOSOLIC PHOSPHOGLUCOMUTASE, mRNA sequence.
CN994661.1:120-141
TCTGAAGTCAACAAGATTGTGAAGGGCTTA120CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfw2052c09.y1 Mdfw Malus domestica cDNA clone Mdfw2052c09 5' similar to TR:Q9SGC1 Q9SGC1 PUTATIVE PHOSPHOGLUCOMUTASE, mRNA sequence.
CN997344.1:6-27
GCTTA6CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfw2063i07.y1 Mdfw Malus domestica cDNA clone Mdfw2063i07 5' similar to TR:Q9ZSQ4 Q9ZSQ4 CYTOSOLIC PHOSPHOGLUCOMUTASE, mRNA sequence.
CO066963.1:478-499
TCTGAAGTCAACAAGATTGTGAAGGGCTTA478CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfr3018c11.y1 Mdfr Malus domestica cDNA clone Mdfr3018c11 5' similar to TR:Q9ZSQ4 Q9ZSQ4 CYTOSOLIC PHOSPHOGLUCOMUTASE, mRNA sequence.
CO722641.1:343-364
TCTGAAGTCAACAAGATTGTGAAGGGCTTA343CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdlv4-4051o13.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4051o13 5' similar to TR:Q9ZSQ4 Q9ZSQ4 CYTOSOLIC PHOSPHOGLUCOMUTASE, mRNA sequence.
CX024598.1:408-429
TCTGAAGTCAACAAGATTGTGAAGGGCTTA408CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfb8007I12.g1 Apple_EST_Mdfb Malus domestica cDNA similar to sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) gb|AAD13031.1| cytosolic phosphoglucomutase [Populus tr
DR998619.1:530-551
TCTGAAGTCAACAAGATTGTGAAGGGCTTA530CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
fl_01A06_AF7 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254886.1:350-371
TCTGAAGTCAACAAGATTGTGGAGGGCTTA350CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGT
Mdfwg2103N08.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) gb|AAD13031.1| cytosolic phosphoglucomutase [Popul
GO504431.1:576-597
TCTGAAGTCAACAAGATTGTGAAGGGCTTA576CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfwj2077J21.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) gb|AAD13031.1| cytosolic phosphoglucomutase [Popul
GO506049.1:409-430
TCTGAAGTCAACAAGATTGTGAAGGGCTTA409CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfwf2083E07.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) gb|AAD13031.1| cytosolic phosphoglucomutase [Popul
GO511633.1:427-448
CTGAAGTCAACAAGATTGTGAAGGGCTTAC427CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdltb7521M23.g1 Apple_EST_Mdltb Malus domestica cDNA 5' similar to sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) gb|AAD13031.1| cytosolic phosphoglucomutase [Popul
GO531881.1:235-256
TCTGAAGTCAACAAGATTGTGAAGGGCTTA235CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC
Mdfrjg3500N10.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5' similar to sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) gb|AAD13031.1| cytosolic phosphoglucomutase [Pop
GO537069.1:296-317
TCTGAAGTCAACAAGATTGTGAAGGGCTTA296CACTCTGATGTTTCCAATGTTGTCAACGCCGATGAATTTGAGTACAAGGATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAACATTGGAAACATCAGAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACATTGGAAACATCAGAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.268 | 0.259 | search_plus_done; http://172.18.8.135:50400/match?q=CAACATTGGAAACATCAGAGTG&k=0&no_gap=0&offset=0&limit=50
1.529 | 1.261 | search_minus_done; http://172.18.8.135:50400/match?q=CACTCTGATGTTTCCAATGTTG&k=0&no_gap=0&offset=0&limit=38
1.542 | 0.013 | cgi_end;

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