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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-18 18:30:18, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

MAG: Microviridae sp. isolate k127_4005227 genomic sequence.
PQ646541.1:2052-2069
CTCATCCGCGCCACGATCTTATTAATATAG2052CAACCATCCGCTTCACTCTGCCGCGTCCGACCTTCCTCCGCGGTACAA
Cucumis melo isolate PI 511890 chromosome 8.
CP136107.1:25400588-25400605
CCATGTCCACGAACGTCCAGAATCCGTTCT25400588CAACCATCCGCTTCACTCCAAATCCGTCCTCCCTCACGCTCCGATTCT
Cucumis melo genomic chromosome, chr_8.
LN713262.1:24646491-24646508
CCATGTCCACGAACGTCCAGAATCCGTTCT24646491CAACCATCCGCTTCACTCCAAATCCGTCCTCCCTCACGCTCCGATTCT
Pseudovibrio sp. FO-BEG1, complete genome.
CP003147.1:1598382-1598399
AAATCATCAAACGTATTGCACTCGCAAATC1598382CAACCATCCGCTTCACTCTTTCTGGCTCCGATCGTAGACAACTTGAAC
Teredinibacter purpureus strain Bs12 chromosome, complete genome.
CP060092.1:41224-41241
ATCATCAAATAGTCTCTTAATAATCGATGA41224CAACCATCCGCTTCACTCCACAGCTGTAGCACACGAAGCACCTCCCCC
Caradrina clavipalpis genome assembly, chromosome: Z.
OW052087.1:15398322-15398339
TGAGGACAGAAGCTTCTGGTGTGACGCTTG15398322CAACCATCCGCTTCACTCGCGCCGGCTATGCCACATACGCTTCCACTG
Standfussiana lucernea genome assembly, chromosome: Z.
OZ059784.1:9424859-9424876
GCTTCTGGTGTGCCACTTCGGGTCCGCTTG9424859CAACCATCCGCTTCACTCGCGCTGGCTATGCCACACACGCTTCCACTG
Quedius lateralis genome assembly, chromosome: 2.
OZ202129.1:45666518-45666535
GGTTTTCTGTTACCTTGCAGAAAAACCTTA45666518CAACCATCCGCTTCACTCCCACAAAGTTCTTCAAGTAAACGGTAAGCT
Oryzias latipes strain HNI chromosome 22.
CP020800.1:18734389-18734406
GACCCAATCCAGCATCGGCAGCCAAGCTAG18734389CAACCATCCGCTTCACTCGCTCTTTATGTTCTTTTTCCTTGTCGCTGT
Coregonus sp. 'balchen' genome assembly, chromosome: 2.
LR778254.1:16628941-16628958
CCACCACTGTAAGATATACCCATCCCAACA16628941CAACCATCCGCTTCACTCCACTTACCTAGCCAACACACCCCCAACACC
Cetorhinus maximus genome assembly, chromosome: 3.
OZ077449.1:203516025-203516042
GCTCTCGGCCCGAGTACCCCCCTCCCGACC203516025CAACCATCCGCTTCACTCACCTTGCCCACCTAACCACCTCACCCACCC
Coregonus lavaretus genome assembly, chromosome: 29.
OZ182192.1:13681966-13681983
CCACCACTGTAAGATATACCCATCCCAACA13681966CAACCATCCGCTTCACTCCACTTACCTAGCCAACACACCCCCAACACC
Cucumis melo subsp. melo EST, clone PSI_12-E03-M13R.
AM721852.2:270-287
AGAATCGGAGCGTGAGGGAGGACGGATTTG270GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
EST1100986 Melon mature fruit library Cucumis melo cDNA clone FR10D15, mRNA sequence.
DV632390.1:18-35
GAGGGAGGACGGATTTG18GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
P349 C. melo-F. oxysporum f.sp. melonis interact lib. Cucumis melo cDNA, mRNA sequence.
HO867691.1:112-129
AGAATCGGAGCGTGAGGGAGGACGGATTTG112GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
EST11032943 MNFG2 library Cucumis melo cDNA clone BA19YD14FM1, mRNA sequence.
JG491230.1:270-287
AGAATCGGAGCGTGAGGGAGGACGGATTTG270GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
EST11038286 MNRP2 library Cucumis melo cDNA clone CA17YD08FM1, mRNA sequence.
JG496573.1:270-287
AGAATCGGAGCGTGAGGGAGGACGGATTTG270GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
EST11051610 VFTP2 library Cucumis melo cDNA clone HA5YA01FM1, mRNA sequence.
JG509897.1:262-279
AGAATCGGAGCGTGAGGGAGGACGGATTTG262GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
EST11052738 VFTP2 library Cucumis melo cDNA clone HA9YM21FM1, mRNA sequence.
JG511025.1:257-274
AGAATCGGAGCGTGAGGGAGGACGGACTTG257GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
Cucumis melo genomic scaffold, anchoredscaffold00010.
LN681882.1:327093-327110
AGAATCGGAGCGTGAGGGAGGACGGATTTG327093GAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGG
Salticus scenicus genome assembly, chromosome: 7.
OZ005654.1:68362943-68362960
GTATTTCGATTGCAGTAAATTGCAGAAAGT68362943GAGTGAAGCGGATGGTTGTATTCGAAACTGGAACTGTCGTGATAGAAA
Anaplectoides prasina genome assembly, chromosome: Z.
OZ077525.1:21608804-21608821
CAGTGGAAGCGTGTGTGGCATAGCCAGCGC21608804GAGTGAAGCGGATGGTTGCAAGCGGGCCCGAAGTGGCACACCAGAAGC
Phyllidia flava genome assembly, chromosome: 4.
OZ184100.1:130505158-130505175
TGTTTTTACCCGGACAGCCGATTTCACCTA130505158GAGTGAAGCGGATGGTTGGGAATGCTATGGTAGGTCCTACTTCTTTCA
Anilocra frontalis genome assembly, chromosome: 8.
OZ209262.1:766788715-766788732
CAGACTACTTGCTCCTTCAAATTCATTGGA766788715GAGTGAAGCGGATGGTTGTGTTTTTTTATTGAAGGTGTTTCGTTCTGA
Lissotriton helveticus genome assembly, chromosome: 9.
OZ180055.1:216656192-216656209
AATGGTTTGGTGATCGCTGGAGGGCAGCAA216656192GAGTGAAGCGGATGGTTGCTACAATAAATGGATGTAGGGCTACTGTGG
Lymnocryptes minimus genome assembly, chromosome: 25.
OZ199712.1:16193902-16193919
GCTTTCTTGGAACAACCCCTTTTGATTAGC16193902GAGTGAAGCGGATGGTTGGAAAGGCAGACAGACAGAGGGACAGGCCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAACCATCCGCTTCACTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACCATCCGCTTCACTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.224 | 0.215 | search_plus_done; http://172.18.8.135:50800/match?q=CAACCATCCGCTTCACTC&k=0&no_gap=0&offset=0&limit=50
0.863 | 0.639 | search_minus_done; http://172.18.8.135:50800/match?q=GAGTGAAGCGGATGGTTG&k=0&no_gap=0&offset=0&limit=38
0.872 | 0.010 | cgi_end;

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