GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 10:37:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum CM_MegaContig_9587 mRNA sequence.
JW100394.1:328-349
GGAGGGAATGCACGAGAATAAGTCCGCGTC328CAACCCAAGGCTTCTCTTTCCCTAGGAATCCTAACTTGGTAATGTTGGCTAC
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:3331973-3331994
GGAGGGAATGCACGAGAATAAGTCCGCGTC3331973CAACCCAAGGCTTCTCTTTCCCTAGGAATCCTAACTTGGTAATGTTGGCTAC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:3429664-3429685
GGAGGGAATGCACGAGAATAAGTCCGCGTC3429664CAACCCAAGGCTTCTCTTTCCCTAGGAATCCTAACTTGGTAATGTTGGCTAC
KS07009A09 KS07 Capsicum annuum cDNA, mRNA sequence.
BM065938.1:290-311
GTAGCCAACATTACCAAGTTAGGATTCCTA290GGGAAAGAGAAGCCTTGGGTTGGACGCGGACTTATTCTCGTGCATTCCCTCC
TSA: Capsicum annuum MGMT_Contig34250 mRNA sequence.
JW084494.1:1816-1837
GTAGCCAACATTACCAAGTTAGGATTCCTA1816GGGAAAGAGAAGCCTTGGGTTGGACGCGGACTTATTCTCGTGCATTCCCTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAACCCAAGGCTTCTCTTTCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACCCAAGGCTTCTCTTTCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=CAACCCAAGGCTTCTCTTTCCC&k=0&no_gap=0&offset=0&limit=50
0.161 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=GGGAAAGAGAAGCCTTGGGTTG&k=0&no_gap=0&offset=0&limit=47
0.163 | 0.001 | cgi_end;

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