GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 23:58:57, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11493807-11493826
GTTCAATCTCCTCGATGTCGCTTGATTCAT11493807CAACGAGCTTCCCATGTTCTTTTTTCCTAAGAATCACTTTCCTGGTGATA
Pycnomerus fuliginosus genome assembly, chromosome: 3.
OZ004619.1:8953231-8953250
GAATAGAGGCATGATCCAACGACATCACTC8953231CAACGAGCTTCCCATGTTCTATGGAGACACATCAAATAGTGGAGAAAACA
Brassica oleracea var. viridis mRNA, clone: KALE-131N17, 5' end sequence.
DK505976.1:728-747
TATCACCAGGAAAGTGATTCTTAGGAAAAA728AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
odh36g04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH954941.1:598-617
TATCACCAGGAAAGTGATTCTTAGGAAAAA598AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
Brassica napus cultivar Xiang5A chromosome 17.
CP151912.1:50313255-50313274
TATCACCAGGAAAGTGATTCTTAGGAAAAA50313255AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44308816-44308835
TATCACCAGGAAAGTGATTCTTAGGAAAAA44308816AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47178440-47178459
TATCACCAGGAAAGTGATTCTTAGGAAAAA47178440AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAACGAGCTTCCCATGTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACGAGCTTCCCATGTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.143 | 0.134 | search_plus_done; http://172.18.8.135:50800/match?q=CAACGAGCTTCCCATGTTCT&k=0&no_gap=0&offset=0&limit=50
0.260 | 0.117 | search_minus_done; http://172.18.8.135:50800/match?q=AGAACATGGGAAGCTCGTTG&k=0&no_gap=0&offset=0&limit=48
0.264 | 0.004 | cgi_end;

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