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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 17:59:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCR01_02K04_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa02K04, mRNA sequence.
CF829093.1:649-668
CTGGCCAGCCTTGTCATCATTATTTCTGGA649CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
UCRCR01_02M02_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa02M02, mRNA sequence.
CF829173.1:649-668
CTGGCCAGCCTTGTCATCATTATTTCTGGA649CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
UCRCS05_0004E04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004E04, mRNA sequence.
CN187308.1:578-597
CTGGCCAGCCTTGTCATCATTATTTCTGGA578CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
UCRCS08_42C04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-42C04-E8-1-4.g, mRNA sequence.
CX075073.1:562-581
CTGGCCAGCCTTGTCATCATTATTTCTGGA562CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
UCRCP01_012_B01_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_012_T3_B01, mRNA sequence.
CX664738.1:617-636
CTGGCCAGCCTTGTCATCATTATTTCTGGA617CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
UCRCS08_64A04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A04-A8-1-5.g, mRNA sequence.
CX675681.1:581-600
CTGGCCAGCCTTGTCATCATTATTTCTGGA581CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
C08038B11SK PhyRootCl1 Citrus reshni cDNA clone C08038B11, mRNA sequence.
FC920011.1:562-581
CTGGCCAGCCTTGTCATCATTATTTCTGGA562CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:4066169-4066188
CTGGCCAGCCTTGTCATCATTATTTCTGGA4066169CAACGCACTCTTTGCATCATGGATGACAGAAGCAGGAAGCTCACCCCAGT
UCRCR01_02K04_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa02K04, mRNA sequence.
CF829094.1:328-347
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC328ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCR01_02M02_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa02M02, mRNA sequence.
CF829174.1:327-346
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC327ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
USDA-FP_5890 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56D04 5', mRNA sequence.
CK739428.1:234-253
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC234ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CGF1004282_D05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IF_D05 5', mRNA sequence.
CK933705.1:386-405
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC386ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CGF1004225_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D03 5', mRNA sequence.
CK934905.1:386-405
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC386ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS04_0001K04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K04, mRNA sequence.
CN181893.1:359-378
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC359ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS05_0004E04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004E04, mRNA sequence.
CN187309.1:373-392
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC373ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS05_0004F16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004F16, mRNA sequence.
CN187371.1:350-369
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC350ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS08_0009C10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0009C10, mRNA sequence.
CV717540.1:367-386
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC367ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS04_2_015C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_015_T3_C05, mRNA sequence.
CV885362.1:270-289
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC270ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS08_42C04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-42C04-E8-1-5.b, mRNA sequence.
CX075072.1:218-237
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC218ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
C01018A05SK Veg1 Citrus clementina cDNA clone C01018A05, mRNA sequence.
CX288215.1:356-375
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC356ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
C05043E11SK Roots1 Citrus sinensis x Citrus trifoliata cDNA clone C05043E11, mRNA sequence.
CX294430.1:371-390
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC371ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
C05044F02SK Roots1 Citrus sinensis x Citrus trifoliata cDNA clone C05044F02, mRNA sequence.
CX294523.1:371-390
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC371ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
C20005C12SK OF2 Citrus clementina cDNA clone C20005C12, mRNA sequence.
CX308037.1:395-414
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC395ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCP01_012_B01_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_012_T7_B01, mRNA sequence.
CX664739.1:173-192
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC173ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
UCRCS08_64A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A04-A8-1-6.b, mRNA sequence.
CX675680.1:331-350
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC331ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
USDA-FP/ARO_16085 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-37_D05 5', mRNA sequence.
DN960255.1:358-377
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC358ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CSAH-PNP1246H24 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H24 5', mRNA sequence.
DR403860.1:377-396
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC377ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
USDA-FP_16317 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_H01 5', mRNA sequence.
DR908189.1:68-87
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC68ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
USDA-FP_17096 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-22_D10 5', mRNA sequence.
DR908968.1:69-88
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC69ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C1-101-025-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660765.1:372-391
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC372ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C1-101-041-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY662239.1:379-398
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC379ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C1-102-101-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672519.1:382-401
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC382ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C1-102-101-H10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY672592.1:369-388
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC369ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C2-003-038-F04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY687199.1:157-176
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC157ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C3-700-033-F01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695170.1:394-413
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC394ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C3-700-085-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY699631.1:382-401
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC382ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CS00-C3-701-038-G08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704996.1:375-394
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC375ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CR05-C3-702-057-H02-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY806347.1:381-400
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC381ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CL06-C4-501-019-A06-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY873538.1:360-379
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC360ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
CL06-C4-501-012-B08-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY874414.1:371-390
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC371ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
C31101C03EF AbioticR1 Citrus reshni cDNA clone C31101C03, mRNA sequence.
FC869419.1:344-363
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC344ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG
C31802E01EF StrCleopN Citrus reshni cDNA clone C31802E01, mRNA sequence.
FC924096.1:382-401
ACTGGGGTGAGCTTCCTGCTTCTGTCATCC382ATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTGGCCAG

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