GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:37:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium subterraneum genome assembly, chromosome: 4.
OX637464.1:5837116-5837135
ATTAGAGTAAATAAGAAGAATAATAATTTT5837116CAACGCCTGCATCGTGTGATAGCACTGCATCCACGGCGGTAAGGATTAGC
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:54744288-54744307
ATAAATTAGAGAAAATAAGAAGAAGAGTTT54744288CAACGCCTGCATCGTGTGATGGCACTGCATCCACGGCGGTAGGGATTAGC
Dicrocoelium dendriticum genome assembly, chromosome: 12.
OX104061.1:41123092-41123111
GATCGACTAATTTTTCATCAGGCAAGACCT41123092CAACGCCTGCATCGTGTGATTCCTCAAGGGAACACTCCATGATAGAATCC
Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:237689789-237689808
GCTCAAATGCTATTTTACCAGGCAGCACCT237689789CAACGCCTGCATCGTGTGATCCTGAACCAAAATGAGGAAAGTAGATATCT
Trifolium repens mRNA, clone: WCC16d12_090, unspecified EST.
FY459626.1:344-363
GCTAATCCTTACCGCCGTGGATGCAGTGCA344ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens mRNA, clone: WCC18a20_017, unspecified EST.
FY460259.1:344-363
GCTAATCCTTACCGCCGTGGATGCAGTGCC344ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTCTAATTTAT
Trifolium repens mRNA, clone: WCC22n04_056, unspecified EST.
FY461948.1:344-363
GCTAATCCTTACCGCCGTGGATGCAGTGCC344ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTCTAATTTAT
Trifolium repens mRNA, clone: WCC31e01, unspecified EST.
FY464946.1:360-379
GCTAATCCTTACCGCCGTGGATGCAGTGCA360ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens mRNA, clone: WCC37j19, unspecified EST.
FY467233.1:345-364
GCTAATCCTTACCGCCGTGGATGCAGTGCA345ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:58604745-58604764
GCTAATCCTTACCGCCGTGGATGCAGTGCA58604745ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:51123912-51123931
GCTAATCCTTACCGCCGTGGATGCAGTGCT51123912ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTCTAATTTAT
Trifolium dubium genome assembly, chromosome: 12.
OX638073.1:32779956-32779975
GCTAATCCCTACCGCCGTGGATGTAGTGCC32779956ATCACACGATGCAGGCGTTGAAATTCTTCTTCTTATTATTTTCTCTAATT
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:56647569-56647588
GCTAATCCTTATCACCGTGGATGCAGTGCT56647569ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTACTCTAATT
Dicrocoelium dendriticum genome assembly, chromosome: 2.
OX104064.1:79749202-79749221
GGATTTTATCATGGAGTGTTCCCTTGCGGT79749202ATCACACGATGCAGGCGTTGATGTGCCGCTCGTTGAACGGTTAGTTGATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAACGCCTGCATCGTGTGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACGCCTGCATCGTGTGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=CAACGCCTGCATCGTGTGAT&k=0&no_gap=0&offset=0&limit=50
0.568 | 0.474 | search_minus_done; http://172.18.8.135:50400/match?q=ATCACACGATGCAGGCGTTG&k=0&no_gap=0&offset=0&limit=46
0.575 | 0.007 | cgi_end;

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