GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 18:36:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Populus nigra genome assembly, chromosome: 7.
OX637678.1:21868839-21868859
TATTATAATCTTTGCAACTAGCAGATTCAA21868839CAACTTGGGAGCTCGAGAAACGTATATTTAACTAGCCATAAGCATCATGAC
Populus nigra genome assembly, chromosome: 7.
OX637678.1:21890662-21890682
ATCTTCAATCTTTGCAACTAGCAGATTCAA21890662CAACTTGGGAGCTCGAGAAACGTATATTTAACTAGCCATAAGCATCATGAC
ORNL225 Poplar BAC Library Populus trichocarpa genomic, genomic survey sequence.
BH860726.1:612-632
GTCCTGATGCTTATGGCTAGTTAAATATAC612GTTTCTCGAGCTCCCAAGTTGTTGAATCTGCTAGTTGCAAAGATTATAATA
Populus trichocarpa clone Pop1-41G18, complete sequence.
AC149575.1:1346-1366
GTCCTGATGCTTATGGCTAGTTAAATATAC1346GTTTCTCGAGCTCCCAAGTTGTTGAATCTGCTAGTTGCAAAGATTATAATA
Populus trichocarpa clone Pop1-41G18, complete sequence.
AC149575.1:20042-20062
GTCCTGATGCTTATGGCTAGTTAAATATAC20042GTTTCTCGAGCTCCCAAGTTGTTGAATCTGCTAGTTGCAAAGATTATAATA
Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:14173-14193
GTCATGATGCTTATGGCTAGTTAAATATAC14173GTTTCTCGAGCTCCCAAGTTGTTGAATCTGCTAGTTGCAAAGATTATAATA
Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:33259-33279
GTCATGATGCTTATGGCTAGTTAAATATAC33259GTTTCTCGAGCTCCCAAGTTGTTGAATCTGCTAGTTGCAAAGATTATAATA
Eustoma grandiflorum DNA, chromosome 22, draft genome sequence.
AP025061.1:28949070-28949090
TGAAGAGCTGCGGATATCTCTCCTTTATCT28949070GTTTCTCGAGCTCCCAAGTTGCCTTGCGCTCCGTATGATTGGTCCACTAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAACTTGGGAGCTCGAGAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACTTGGGAGCTCGAGAAAC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.155 | 0.146 | search_plus_done; http://172.18.8.135:50400/match?q=CAACTTGGGAGCTCGAGAAAC&k=0&no_gap=0&offset=0&limit=50
0.247 | 0.093 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTCTCGAGCTCCCAAGTTG&k=0&no_gap=0&offset=0&limit=48
0.252 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).