GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 13:50:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pipistrellus nathusii genome assembly, chromosome: 1.
OY882858.1:34829887-34829906
GAAGATCCAATCATGAATTTAAAAAAAGGT34829887CAAGAAAAACAATCTCCACCCATTCATTTCTGGGTTACTTTTTTCCTTAA
Pipistrellus nathusii genome assembly, chromosome: 1.
OY883178.1:34943253-34943272
GAAGATCCAATCATGAATTTAAAAAAAGGA34943253CAAGAAAAACAATCTCCACCCATTCATTTCTGGGTTACTTTTTTCCTTAA
Notothenia rossii genome assembly, chromosome: 8.
OX449118.1:8090737-8090756
GGCCAACATGGGTATTACAACAACAAACTC8090737CAAGAAAAACAATCTCCACCAATAAAACATGTTCCCTAAAAAATATAAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB016C20, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240994.1:47512-47531
AAAAAATGGAAGCAGATCTGACTTTTTCTC47512CAAGAAAAACAATCTCCACCGTTGGATCTTCCCGACCCCTTCGCCACGTT
Brassica rapa subsp. pekinensis clone KBrH121D17, complete sequence.
FP325328.1:39224-39243
AAAAAATGGAAGCAGATCTGACTTTTTCTC39224CAAGAAAAACAATCTCCACCGTTGGATCTTCCCGACCCCTTCGCCACGTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15408462-15408481
AAAAAATGGAAGCAGATCTGACTTTTTCTC15408462CAAGAAAAACAATCTCCACCGTTGGATCTTCCCGACCCCTTCGCCACGTT
Hoplodrina blanda genome assembly, chromosome: 7.
OX438585.1:6530059-6530078
TACGAAACCAAGTAACTGCAAGGTCAACTA6530059CAAGAAAAACAATCTCCACCCTACCTCCTGACATATTTATATGCATTAAT
Tetrao urogallus genome assembly, chromosome: Z.
OX596297.1:65047293-65047312
GCTGGAGGCTTTCTAATGGATTAGTACGAG65047293GGTGGAGATTGTTTTTCTTGGCTTTGACCCTGGTTTCAGTTCTAACTCAT
Tetrao urogallus genome assembly, chromosome: Z.
OX596297.1:65048144-65048163
GCTGGAGGCTTTCTAATGGATTAGTACGAG65048144GGTGGAGATTGTTTTTCTTGGCTTTGACCCTGGTTTCAGTTCTAACTCAT
Tetrao urogallus genome assembly, chromosome: Z.
OX596297.1:65048995-65049014
GCTGGAGGCTTTCTAATGGATTAGTACGAG65048995GGTGGAGATTGTTTTTCTTGGCTTTGACCCTGGTTTCAGTTCTAACTCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058F21, complete sequence.
AC189404.2:50909-50928
AACGTGGCGAAGGGGTCGGGAAGATCCAAC50909GGTGGAGATTGTTTTTCTTGGAGAAAAAGTCAGATCTGCTTCCATTTTTT
Draba incana genome assembly, chromosome: 8.
OY755209.1:23490996-23491015
GAGGCTTGAATGTGTTTCTACGAGATTCAT23490996GGTGGAGATTGTTTTTCTTGTTAAAGAAAATATTTTTACTGTGCCGACAT
Mytilus galloprovincialis D-octopine dehydrogenase (OcDH) mRNA, complete cds.
JN673724.1:382-401
AACGAAAGATGCAGCTAAGGCCATGTCTGG382GGTGGAGATTGTTTTTCTTGTCGTTCCAGCATTTGCTCACGCTCAGTATT
Mytilus edulis D-octopine dehydrogenase (OcDH) gene, partial cds.
JN673725.1:252-271
AACGAAAGATGCAGCTAAGGCCATGTCTGG252GGTGGAGATTGTTTTTCTTGTCGTTCCAGCATTTGCTCACGCTCAGTATT
Mytilus edulis genome assembly, chromosome: 1.
OY782956.1:86047752-86047771
AACGAAAGATGCAGCTAAGGCCATGTCTGG86047752GGTGGAGATTGTTTTTCTTGTCGTTCCAGCATTTGCTCACGCTCAGTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGAAAAACAATCTCCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGAAAAACAATCTCCACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.153 | 0.145 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGAAAAACAATCTCCACC&k=0&no_gap=0&offset=0&limit=50
0.420 | 0.267 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGGAGATTGTTTTTCTTG&k=0&no_gap=0&offset=0&limit=43
0.425 | 0.005 | cgi_end;

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