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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 13:24:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Falco punctatus genome assembly, chromosome: 3.
OY723435.1:16634098-16634117
GCTGGGAGGAGGATCATGGCTCATCTGCGG16634098CAAGAAGGACAAAAAGGCCAGTGTGGGCATCCAGCCCCAAGCCTGGCACT
Sequence 1540 from patent US 7635798.
GV605384.1:201-220
GGCCGCATTGAAGGATGATAAACGGAAGGC201CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Sequence 5623 from patent US 7635798.
GV609467.1:201-220
GGCCGCATTGAAGGATGATAAACGGAAGGC201CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGATGCCTC
KS01054H03 KS01 Capsicum annuum cDNA, mRNA sequence.
BM063385.1:193-212
AGCCACATTGAAAGACGACAAAAAGAAGGT193CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
BJ02012A08 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO907045.1:131-150
AGCCACATTGAAAGACGACAAAAAGAAGGT131CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
TT-30_P04 Burley21 trichome library Nicotiana tabacum cDNA, mRNA sequence.
FG640452.1:200-219
GGCTACGTTGAAGGACGATAAACGGAAGGC200CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
TT-06_C18 K326 late senescent leaf library Nicotiana tabacum cDNA, mRNA sequence.
FG643552.1:211-230
GGCCACATTGAAGGACGATAAACGGAAGGC211CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
TT-12_J21 K326 late senescent leaf library Nicotiana tabacum cDNA, mRNA sequence.
FG643885.1:200-219
GGCTACGTTGAAGGACGATAAACGGAAGGC200CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: AE003J18, 5'end, expressed in ovary at anthesis.
FS001523.1:191-210
AGCCACATTGAAGGAGGACAAAAAGAAGGT191CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: AE504H16, 5'end, expressed in ovary at 5d post-anthesis.
FS005966.1:191-210
AGCCACATTGAAGGAGGACAAAAAGAAGGT191CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: AE507J14, 5'end, expressed in ovary at 5d post-anthesis.
FS007808.1:173-192
AGCCACATTGAAGGAGGACAAAAAGAAGGT173CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: CHX04F17, 5'end, expressed in ovary at 24h after anthesis.
FS013588.1:191-210
AGCCACATTGAAGGAGGACAAAAAGAAGGT191CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: MLF03P09, 5'end, expressed in leaf at fully expanded leaf.
FS024548.1:191-210
AGCCACATTGAAGGAGGACAAAAAGAAGGT191CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: PLA07O08, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS047061.1:212-231
AGCCACATTGAAGGAGGACAAAAAGAAGGT212CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Solanum melongena mRNA, clone: SEP07M07, 5'end, expressed in sepal at 10d after anthesis.
FS062445.1:191-210
AGCCACATTGAAGGAGGACAAAAAGAAGGT191CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Nicotiana tabacum cDNA, clone: TBK02GR0051_2_B04, 5'-end sequence.
FS419274.1:194-213
GGCCACATTGAAGGACGATAAACGGAAGGC194CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Nicotiana tabacum cDNA, clone: TBK02GR0088_4_F10, 5'-end sequence.
FS432840.1:194-213
GGCTACGTTGAAGGACGATAAACGGAAGGC194CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Nicotiana tabacum cDNA, clone: TBK02GR0103_2_G10, 5'-end sequence.
FS438120.1:222-241
GGCTACGTTGAAGGACGATAAACGGAAGGC222CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
NSYL10376 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ949835.1:105-124
GGCCACATTGAAGGACGATAAACGGAAGGC105CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
NSYL3009 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ952398.1:180-199
GGCCACATTGAAGGACGATAAACGGAAGGC180CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
NSYL10211 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ952810.1:223-242
GGCCACATTGAAGGACGATAAACGGAAGGC223CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
NTOM8069 Nicotiana tomentosiformis normalized full-length cDNA Library Nicotiana tomentosiformis cDNA 5', mRNA sequence.
JZ959885.1:180-199
AAAGGCTACGTTGAACGATAAACGGAAGGC180CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
TSA: Lingulodinium polyedrum Locus_30033_Transcript_1/1.Lipo mRNA sequence.
JO721466.1:521-540
GAGTGCGAAGAAGAAGGCGAAGAAGGAGCG521CAAGAAGGACAAAAAGGCCAAAAAGAAGAAAAAGGAAAAGAAGGAGAGCA
TSA: Capsicum annuum EJ_MegaContig_34041, mRNA sequence.
JW135812.1:1411-1430
CCCCTATGAAGATCTAGATGAAAAGAAGGT1411CAAGAAGGACAAAAAGGCCAAGAA
BAMBOO_04_83_C11.g1 Anji moso shotgun library Phyllostachys edulis genomic clone BAMBOO_04_83_C11.g1, genomic survey sequence.
ED018364.1:229-248
CAAGCATCCTAAAGCGGCCGGCGAAAGTAG229CAAGAAGGACAAAAAGGCCAAGAAATCCAAGAACAAGGTGAAAGGCCAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:166135713-166135732
AGCCACATTGAAAGACGACAAAAAGAAGGT166135713CAAGAAGGACAAAAAGGCCAAGAAAGATCCTAATAAGCCTAAGAGGCCTC
Astragalus glycyphyllos genome assembly, chromosome: 2.
OY754308.1:3873773-3873792
CTATCGTTGATTAAGGTGTTACAGCTGCAA3873773CAAGAAGGACAAAAAGGCCATTTGCTTGGATGAGTGACTATGAAATTGGT
Alisma plantago-aquatica genome assembly, chromosome: 7.
OY856415.1:26999189-26999208
CCCCTAGACTGAAAAGAAAAGGGAGAAGAA26999189CAAGAAGGACAAAAAGGCCAAAAAGCATGAAGAGGAAGAAGAACTCAAGT
Solanum melongena mRNA, clone: AE504H16, 3'end, expressed in ovary at 5d post-anthesis.
FS005967.1:271-290
GAGGCCTCTTAGGCTTATTAGGATCTTTCT271TGGCCTTTTTGTCCTTCTTGACCTTCTTTTTGTCCTCCTTCAATGTGGCT
Solanum melongena mRNA, clone: MLF03P09, 3'end, expressed in leaf at fully expanded leaf.
FS024549.1:621-640
GAGGCCTCTTAGGCTTATTAGGATCTTTCT621TGGCCTTTTTGTCCTTCTTGACCTTCT
Solanum melongena mRNA, clone: PLA07O08, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS047062.1:265-284
GAGGCCTCTTAGGCTTATTAGGATCTTTCT265TGGCCTTTTTGTCCTTCTTGACCTTCTTTTTGTCCTCCTTCAATGTGGCT
TSA: Capsicum annuum MGMT_Contig24300, mRNA sequence.
JW074544.1:770-789
GAGGCCTCTTAGGCTTATTAGGATCTTTCT770TGGCCTTTTTGTCCTTCTTGACCTTCTTTTTGTCGTCTTTCAATGTGGCT
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:99224537-99224556
GAGGCCTCTTAGGCTTATTAGGATCTTTCT99224537TGGCCTTTTTGTCCTTCTTGACCTTCTTTTTGTCGTCTTTCAATGTGGCT
Curvularia clavata strain yc1106 chromosome 1.
CP089274.1:4910890-4910909
CCTTCTTAACGTCACCAAAGTCGAATAGAA4910890TGGCCTTTTTGTCCTTCTTGGTAAGGGCACGTTTGCCCTCGATCTCCAAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 9.
CP124711.1:123630941-123630960
GTGGCCTCTTAGGCTTATTAGGATCTTTCT123630941TGGCCTTTTTGTCCTTCTTGACCTTCTTTTTGTCGTCTTTCAACGTGGCT
Chionographis japonica genome assembly, chromosome: 2.
OX393550.1:8975087-8975106
TATATATTTTACCGACGGAAAGGTTCTTCT8975087TGGCCTTTTTGTCCTTCTTGATCGAGGATCTTCCTCGTGCCTTGATCTGA
Oldenlandia corymbosa var. corymbosa genome assembly, chromosome: 5.
OX459122.1:2967759-2967778
CAGTCTTACCACATTGGAAACAAGTGCCTA2967759TGGCCTTTTTGTCCTTCTTGATCATAGGTCGTGGCTTGAAGACAACTTGC
Rosa rugosa genome assembly, chromosome: 2.
OY288192.1:39413035-39413054
TTCTTTTTCTTTTTCTTTTATCTTGTGAAT39413035TGGCCTTTTTGTCCTTCTTGAATATATCTGTTCAAAGGTTTATTATTTGA
Medioppia subpectinata.
OC856527.1:7841-7860
GTTCGCCGAACAGCGATATCGTCATCTGTT7841TGGCCTTTTTGTCCTTCTTGTTCTCGTACGACGACTTTCTCGTCCACCGC
Lepidonotus clava genome assembly, chromosome: 14.
OW387146.1:24246913-24246932
CAAATAAGGCCATCCCTCAGTACTTGGGGT24246913TGGCCTTTTTGTCCTTCTTGTCCTTAAGGTCCGACTTAGACTTGTTCATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAGAAGGACAAAAAGGCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGAAGGACAAAAAGGCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
2.009 | 2.001 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGAAGGACAAAAAGGCCA&k=0&no_gap=0&offset=0&limit=50
2.371 | 0.361 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCCTTTTTGTCCTTCTTG&k=0&no_gap=0&offset=0&limit=22
2.378 | 0.008 | cgi_end;

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