GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:26:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST1234506 ESTSYN-L Musa acuminata AAA Group cDNA clone pESTSYNL-2P20 5', mRNA sequence.
ES434300.1:105-124
GCTGACAGAGCCCATCGTGCTCCTCTTCTA105CAAGACCGTCTCCATCTGGTTCCTCCTCCTCCAGAAGATATCCCTCCGTT
EST1234856 ESTSYN-L Musa acuminata AAA Group cDNA clone pESTSYNL-3N10 5', mRNA sequence.
ES434650.1:113-132
GCTGACAGAGCCCATCGTGCTCCTCTTCTA113CAAGACCGTCTCCATCTGGTTCCTCCTCCTCCAGAAGATATCCCTCCAGT
TSA: Musa acuminata AAA Group Unigene69547_B1 mRNA sequence.
JV318425.1:43-62
GCTGACAGAGCCCATCGTGCTCCTCTTCTA43CAAGACCGTCTCCATCTGGTTCCTCCTCCTCCAGAAGATATCCCTCCAGT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:34253530-34253549
GCTGACAGAGCCCATCGTGCTCCTCTTCTA34253530CAAGACCGTCTCCATCTGGTTCCTCCTCCTCCAGAAGATATCCCTCCAGC
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:37838247-37838266
GCTGACAGAGCCCATCGTGCTCCTCTTCTA37838247CAAGACCGTCTCCATCTGGTTCCTCCTCCTCCAGAAGATATCCCTCCGGT
Cottoperca gobio genome assembly, chromosome: 15.
LR131922.1:23796667-23796686
TGGCTCTGACTGAGCAGGAGGAGACGCAGG23796667ACCAGATGGAGACGGTCTTGGAGGAGAAACTGAACCTCATCCAGGAGATG
Musa troglodytarum cultivar karat chromosome 7.
CP097509.1:8693172-8693191
ACTGGAGGGATATCTTCTGGAGGAGGAGGA8693172ACCAGATGGAGACGGTCTTGTAGAAGAGGAGCACGATGGGCTCTGTCAGC
Canna indica chromosome 2.
CP136891.1:12687368-12687387
AGCGCCAGGAGACCTTTTGGAGGAGGATGA12687368ACCAGATGGAGACGGTCTTGTAGAAGATGAGCACGATGGAATCCGCCAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGACCGTCTCCATCTGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGACCGTCTCCATCTGGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.254 | 0.245 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGACCGTCTCCATCTGGT&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAGATGGAGACGGTCTTG&k=0&no_gap=0&offset=0&limit=45
0.292 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).