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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 04:25:53, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BN25.071I10F020326 BN25 Brassica napus cDNA clone BN25071I10, mRNA sequence.
CD828675.1:38-58
CTCTCTCTCTCTCTCTTCTCTTCTATTCAT38CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
BN40.041O09F011207 BN40 Brassica napus cDNA clone BN40041O09, mRNA sequence.
CD829366.1:4-24
CAT4CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
EL832 Brassica embryo library (EL) Brassica napus cDNA clone EL832 complete, mRNA sequence.
CN831149.1:14-34
CTCTTCTATTCAT14CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
EL969 Brassica embryo library (EL) Brassica napus cDNA clone EL969 complete, mRNA sequence.
CN831291.1:22-42
TTTCTCTTCTCTTCTATTCAT22CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
54ACDHPE_UP_007_D10_24AUG2004_074 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY001714.1:35-55
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT35CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
15ACDHYS_UP_010_B10_08MAR2004_078 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE401032.1:36-56
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT36CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
15ACDHYS_UP_029_H11_14OCT2004_081 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE402387.1:36-56
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT36CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
17ACDHMS_UP_024_B10_28OCT2004_078 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
EE405699.1:36-56
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT36CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
17ACDHMS_UP_024_F10_28OCT2004_070 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
EE405746.1:38-58
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT38CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
56ACAC48_UP_005_H08_30AUG2004_050 Brassica napus Brassica napus cDNA 5', mRNA sequence.
EE412689.1:35-55
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT35CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
64ETCOT5_T3_009_H10_14JAN2005_066 Brassica napus mature seed Normalized library at CoT 5 Brassica napus cDNA 5', mRNA sequence.
EE437939.1:20-40
GCACGAGGCTTCTATTCAT20CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
25RDBNM_UP_069_E03_03NOV2005_023 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
EE512395.1:4-24
GAT4CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
61RDBNCM_UP_018_C06_12NOV2004_044 Brassica napus 61RDBNCM Brassica napus cDNA 5', mRNA sequence.
EE537471.1:38-58
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT38CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
61RDBNCM_UP_075_F06_08NOV2005_038 Brassica napus 61RDBNCM Brassica napus cDNA 5', mRNA sequence.
EE540991.1:36-56
CTCTCTCTCTTTCTCTTCTCTTCTATTCAT36CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT
Brassica napus genome assembly, chromosome: A10.
HG994364.1:18731128-18731148
CTCTCTCTCTCTCTCTTCTCTTCTATTCAT18731128CGCTACAGACACAATCTCTTGCTTGAAATGACGCTCCCTTCCCTGTTCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGAGATTGTGTCTGTAGCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGAGATTGTGTCTGTAGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.320 | 0.311 | search_plus_done; http://172.18.8.135:50800/match?q=CAAGAGATTGTGTCTGTAGCG&k=0&no_gap=0&offset=0&limit=50
1.753 | 1.434 | search_minus_done; http://172.18.8.135:50800/match?q=CGCTACAGACACAATCTCTTG&k=0&no_gap=0&offset=0&limit=50
1.764 | 0.011 | cgi_end;

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