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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:17:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scomber scombrus genome assembly, chromosome: 9.
OY829926.1:18754261-18754280
GCCCCACACAAGTCCTATATCTCATAACCT18754261CAAGAGCCAAACTGACCCAATCCCCTCCTCTGAAGATACACAAGTTGAAA
Sequence 14765 from patent US 10766935.
MV658160.1:287-306
CTACATTACTGTTTTGACTGTGATTGGTTA287CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
Sequence 14765 from patent US 11566053.
OS281639.1:287-306
CTACATTACTGTTTTGACTGTGATTGGTTA287CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
ram01-1ms3-g03 Ram01 Ribes americanum cDNA clone ram01-1ms3-g03 5', mRNA sequence.
CV461041.1:226-245
ATACATAACTGTATTGACGGTGATTGGTTA226CAAGAGCCAAACTGACCCAACCAAGTTGGATGTTGATGAATGTGGTGGTG
Camellia sinensis mRNA, clone: LR01H08, 5' end sequence, expressed in lateral roots.
FS943411.1:285-304
CTACATTACTGTTTTGACTGTGATTGGTTA285CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
Camellia sinensis mRNA, clone: RT3F05, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS951295.1:303-322
CTACATTACTGTTTTGACTGTGATTGGTTA303CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
EST1038 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_20.M13+_D03.ab1, mRNA sequence.
GE650711.1:306-325
CTACATTACTGTTTTGACTGTGATTGGTTA306CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
EST1050 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_34.M13+_B05.ab1, mRNA sequence.
GE650723.1:326-345
CTACATTACTGTTTTGACTGTGATTGGTTA326CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
EST1394 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_12_91.M13+_C12.ab1, mRNA sequence.
GE651067.1:303-322
CTACATTACTGTTTTGACTGTGATTGGTTA303CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
EST2226 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_24_02.M13+_B01.ab1, mRNA sequence.
GE651899.1:307-326
CTACATTACTGTTTTGACTGTGATTGGTTA307CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
SSH4_PB_135_TRA_8027 Camellia sinensis ALT78 cDNA library Camellia sinensis cDNA 5', mRNA sequence.
HS392935.1:149-168
CTACATTACTGTTTTGACTGTGATTGGTTA149CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
TSA: Ipomoea batatas Contig_26143.Ipbalsr mRNA sequence.
JP130731.1:340-359
CTACGTCACTGTCCTCACTGTGATTGGGTA340CAAGAGCCAAACTGACCCAAATGTGAAGGGCACTGATGAATGTGGCGGCG
Ipomoea trifida cultivar NCNSP0306 chromosome 4.
CP025647.1:3872776-3872795
CTACGTCACTGTCCTCACTGTGATTGGGTA3872776CAAGAGCCAAACTGACCCAAATGTGAATGGCACTGACGAATGTGGCGGCG
Rhododendron vialii isolate Sample 1 chromosome 4b.
CP127055.1:30041112-30041131
TTACATCACTGTTTTGACAGTGATTGGATA30041112CAAGAGCCAAACTGACCCAACCAAGAATAGCGACGCCTGCGGTGGCGTGG
Rhododendron vialii isolate Sample 1 chromosome 4a.
CP127068.1:30713634-30713653
TTACATCACTGTTTTGACAGTGATTGGATA30713634CAAGAGCCAAACTGACCCAACCAAGAATAGCGACGCCTGCGGTGGCGTGG
Camellia sinensis aquaporin protein PIP2-1 (PIP2-1) mRNA, complete cds.
MH167483.1:244-263
CTACATTACTGTTTTGACTGTGATTGGTTA244CAAGAGCCAAACTGACCCAACCAAGACTACTGATGCCTGTGGTGGTGTTG
Solanum dulcamara genome assembly, chromosome: 5.
OX359256.1:39370750-39370769
CCGAGTGCAAATCTGAGTAAACTACCAATC39370750CAAGAGCCAAACTGACCCAATAAGTAGTTGGTTAGCATACTAAATCTATA
Myrica gale genome assembly, chromosome: 10.
OZ005607.1:9541532-9541551
GTACATAACTGTGTTGACGGTTATTGGATA9541532CAAGAGCCAAACTGACCCAACCAAGGGCGGTGACGACTGTGGCGGCGTTG
Philereme vetulata genome assembly, chromosome: Z.
OU975417.1:14120258-14120277
CTAAACCTGTTTGCAGTGCGGCCAACGACC14120258CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 1.
OU975418.1:18680978-18680997
CTAAACCTGTTTGCAGTGCGGCCAACGACC18680978CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 1.
OU975418.1:23547711-23547730
CTAAACCTGTTTGCAGTGCGGCCAACGACT23547711CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTACGGACATCAGC
Philereme vetulata genome assembly, chromosome: 2.
OU975419.1:15419665-15419684
CTAAACCTGTTTGCAGTGCGGCCAACGATC15419665CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 2.
OU975419.1:22830646-22830665
CTAAACCTGTTTGCAGTGCGGCCAACGACC22830646CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 5.
OU975422.1:458697-458716
CTAAACCTGTTTGCAGTGCGGCCAACGACC458697CAAGAGCCAAACTGACCCAACATTATACCGAAAATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 5.
OU975422.1:11246533-11246552
CTAAACCTATTTGCAGTGCGGCCAACGACC11246533CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 8.
OU975425.1:9245608-9245627
CTAAACCTGTTTGCAGTGCGGCCAACGACC9245608CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 11.
OU975428.1:12206924-12206943
CTAAACCTGTTTGCAGTGCGGCCAACGACC12206924CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 12.
OU975429.1:12271521-12271540
CTAAACCTGTTTGCAGTGCGGTCAACGACC12271521CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 12.
OU975429.1:12950888-12950907
CTAAACCTGTTTGCAGTGCGGCCAACGACC12950888CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACTTCAGC
Philereme vetulata genome assembly, chromosome: 20.
OU975437.1:1846481-1846500
GTAAACCTGTTTGCAGTGCGGCGAACGACC1846481CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 20.
OU975437.1:7411734-7411753
TTCGGTCACTAAACCTGTTTGTGACCGACC7411734CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 23.
OU975440.1:592713-592732
CTAAACCTGTTTACAGTGCGGCCAACGACC592713CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 23.
OU975440.1:10885875-10885894
CTAAACCTGTTTGCAGTGCGGCCAACGACC10885875CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATTAGC
Philereme vetulata genome assembly, chromosome: 30.
OU975447.1:8651521-8651540
CTAAACCTGTTTGCAGTGCGGCCAACGACC8651521CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 36.
OU975453.1:3962386-3962405
CTAAACCTGTTTGCAGTGCGGCCAACGATC3962386CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGT
Philereme vetulata genome assembly, chromosome: 46.
OU975463.1:748432-748451
TCGGTCACTAAACCTGTTTGCAGTGCGGCC748432CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 57.
OU975474.1:5667360-5667379
CTAAACCTGTTTGCAGTGCGGCCAACGACC5667360CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Philereme vetulata genome assembly, chromosome: 65.
OU975482.1:3651974-3651993
CTAAACCTGTTTGCAGTGCGGCCAACGACC3651974CAAGAGCCAAACTGACCCAACATTATACCGAAGATATTCCGGACATCAGC
Nycteola revayana genome assembly, chromosome: 1.
OX344838.1:22764235-22764254
CCAAGCCTGTTTCCAGTGCGACTACTGACC22764235CAAGAGCCAAACTGACCCAACAATATACCGAGGATATCCTTAGCTAGGCT
Nycteola revayana genome assembly, chromosome: Z.
OX344842.1:8656870-8656889
ACCAAGCCTATGTTCATTGGGCTATAGAAC8656870CAAGAGCCAAACTGACCCAACACTATACCGAGGATATCCCGGACATCAGC
Nycteola revayana genome assembly, chromosome: 8.
OX344846.2:19104151-19104170
CCGCACTGGAAACAGGCTTGGGTCTGTACC19104151CAAGAGCCAAACTGACCCAACACTGTACCGAGGATATCCCGGAAATCAGC
Nycteola revayana genome assembly, chromosome: 16.
OX344854.2:12841113-12841132
CCAAGCCTGTTACCAGTGCGGCTACAGACC12841113CAAGAGCCAAACTGACCCAACACTATACCGAGGATATCCCGGACATCAGC
Nycteola revayana genome assembly, chromosome: 16.
OX344854.2:20521839-20521858
CCAAGCCTGATTTTAATGCGGCTACAGACC20521839CAAGAGCCAAACTGACCCAACATTATACCGAGGATATCCCGGACATCAGC
Yponomeuta plumbellus genome assembly, chromosome: 1.
OX371192.1:12434605-12434624
CAAAACCTATTAGCAGTTTGCACAAAGACC12434605CAAGAGCCAAACTGACCCAACATTATACCGAAGATCAGCCTGTACGAGAT
Yponomeuta plumbellus genome assembly, chromosome: 2.
OX371193.1:20387012-20387031
CAAAACCTGTTAGCAGTTTGCACAAAGACC20387012CAAGAGCCAAACTGACCCAACATTATACCAAAGATATCCCGGACATCAGC
Yponomeuta plumbellus genome assembly, chromosome: 7.
OX371198.1:15332198-15332217
CAAAACCTATTAGCAGATTGCACAAAGACC15332198CAAGAGCCAAACTGACCCAACATTATACCGAAGATCAGCCTGTACGAGAT
Yponomeuta plumbellus genome assembly, chromosome: 24.
OX371215.1:2279608-2279627
CAAAACCTGTTAGCAGTTTGCACAAAGACC2279608CAAGAGCCAAACTGACCCAACATTATACCGAAGATATCCCGGACATCAGC
Archips xylosteana genome assembly, chromosome: Z.
OX387343.1:19671385-19671404
CAAAACCAGTTTCTAGTGCGGCTGAAGACC19671385CAAGAGCCAAACTGACCCAACACTACCGAGGATATCCCGGACATCAGCCT
Archips crataeganus genome assembly, chromosome: W.
OX402046.1:25893808-25893827
GATCTGTTAATTCTATTGCGGCTGAAGACC25893808CAAGAGCCAAACTGACCCAACACTATACCGAAGATATCCCGGAAATCAGC
Archips crataeganus genome assembly, chromosome: 1.
OX402047.1:22138076-22138095
AATCTGTTAATTCTATTGCGGCTGAAGACC22138076CAAGAGCCAAACTGACCCAACACTATACCGAAGATATCCCGGAAATCAGC
Archips crataeganus genome assembly, chromosome: 8.
OX402054.1:12375861-12375880
AATCTGTTAATTCCATTGTGGCTGAAGACC12375861CAAGAGCCAAACTGACCCAACACTATACCGAAGATATCCCGGATATCAGC
Archips crataeganus genome assembly, chromosome: 27.
OX402073.1:11031333-11031352
AATCTGTTAATTCCATTGTGGCTGAAGACC11031333CAAGAGCCAAACTGACCCAACACTATACCGAAGATATCCCGGAAATCAGC
Callimorpha dominula genome assembly, chromosome: 29.
OX457019.1:7774968-7774987
CCAAATCTATTCGAAGTTTGGCCGAAGATG7774968CAAGAGCCAAACTGACCCAACATTATCTCCAAAATAGCCCGGATATCAGG
Pasiphila rectangulata genome assembly, chromosome: Z.
OY720236.1:1548053-1548072
CTAAACCTGTTTTCAGTGCGGCCAATGACG1548053CAAGAGCCAAACTGACCCAACATTATACCTAAGATATCCCGAACATCAGC
Pasiphila rectangulata genome assembly, chromosome: 12.
OY720247.1:12233855-12233874
ATTTTTTATTCTTTTATTTCACACAAAGCC12233855CAAGAGCCAAACTGACCCAACGTTATACCGAGGATATATAAAATAATAAA
Pasiphila rectangulata genome assembly, chromosome: 25.
OY720260.1:715228-715247
CGAAACCTGTTTGCAGTGCGGCCAACGACC715228CAAGAGCCAAACTGACCCAATATTATACCGAAGATATTCCGGACATAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGAGCCAAACTGACCCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGAGCCAAACTGACCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.286 | 1.277 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGAGCCAAACTGACCCAA&k=0&no_gap=0&offset=0&limit=50
1.341 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGGTCAGTTTGGCTCTTG&k=0&no_gap=0&offset=0&limit=0
1.341 | 0.000 | cgi_end;

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