GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 01:46:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0123302 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV117990.1:551-570
CCCGGTGGCTAAAATTTGAAAGAAACCTAA551CAAGATCATCCCAGTGTTGAGGAGAGCCAAGTTCGATATTGAAATCGATA
TSA: Raphanus sativus RS26992 mRNA sequence.
JT811539.1:42-61
CGGGGTGGCTAAAATTTGAAAGAAACCTAA42CAAGATCATCCCAGTGTTGAGGCGAGCCAAGTTCGATATTGAAATCGATA
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 7.
CP094637.1:17326281-17326300
TGTTCATTTCTTAATTATTATTTTACCTGG17326281CAAGATCATCCCAGTGTTGAGGTGAGCCAAGCTCTATATTGAAATCAATA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:52416753-52416772
TGTTGATCAAAATGTTCCCCTAGTACCTAA52416753CAAGATCATCCCAGTGTTGAGGAGAGCCAAGTTCGATATTGAAATCGATA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11356434-11356453
TGTAGATCAAAATGTTCCCCTAGTACCTAA11356434CAAGATCATCCCAGTGTTGAGGAGAGCCAAGTTCGATATTGAAATCGATA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:37434832-37434851
TGTTGATCAAAATGTTCCCCTAGTACCTAA37434832CAAGATCATCCCAGTGTTGAGGAGAGCCAAGTTCGATATTGAAATCGATA
Brassica rapa genome, scaffold: A06.
LR031569.1:47498044-47498063
TGTTGATCAAAATGTTCCCCTAGTACCTAA47498044CAAGATCATCCCAGTGTTGAGGTGAGCCAAGTTCGATATTGAAATCGATA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:51114100-51114119
TGTTGATCAAAATGTTCCCCTAGTACCTAA51114100CAAGATCATCCCAGTGTTGAGGTGAGCCAAGTTCGATATTGAAATCGATA
Lactuca saligna genome assembly, chromosome: 8.
OX465084.1:58809511-58809530
TCTTGGTGCTATATGCTGAAAGATACCTTG58809511CAAGATCATCCCAGTGTTGACTTCCGCCTGATTCTATGTCAAAATCTATT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:9041136-9041155
TATCAAAACTTTTCCTAGAATACTACCTAA9041136CAAGATCATCCCAGTGTTGAGGCGAGCCAAGTTCGATATTGAAATCGATA
Euphorbia lathyris genome assembly, chromosome: 4.
OY755223.1:59510550-59510569
TCTGATTAGTGTATGCTGATAAGAATCTAG59510550CAAGATCATCCCAGTGTTGATTTGTACCTCCTTCGATATCAAAATCAATC
Oryzias latipes strain HSOK chromosome 14.
CP020634.1:1509959-1509978
CACTTGTTAGAAGTTTTCTTTTAGGTTACC1509959TCAACACTGGGATGATCTTGAACTCAGTTTAAATAGGTGGTCATTGCTGG
Oryzias latipes strain HNI chromosome 14.
CP020792.1:857945-857964
CACTTGTTAGAAGTTTTCTTTTAGGTTACC857945TCAACACTGGGATGATCTTGAACTCAGTTTAAATAGGTGTTCAGTGCTGG
0123388 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV118076.1:548-567
TATCGATTTCAATATCGAACTTGGCTCTCC548TCAACACTGGGATGATCTTGTTAGGTTTCTTTCAAATTTTAGCCACCGGG
RR4EA56TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925143.1:122-141
TATCGATTTCAATATCGAACTTGGCTCGCC122TCAACACTGGGATGATCTTGTTAGGTTTCTTTCAAATTTTAGCCACCCCG
Brassica napus acidic endochitinase (ChiA-1) gene, partial cds.
AF207560.1:76-95
TATCGATTTCAATATCGAACTTGGCTCTCC76TCAACACTGGGATGATCTTGTTAGGTACTAGGGGAACATTTTGATCTACA
Brassica napus acidic endochitinase (ChiA-2) gene, partial cds.
AF207561.1:76-95
TATCGATTTCAATATCGAACTTGGCTCACC76TCAACACTGGGATGATCTTGTTAGGTACTAGGGGAACATTTTGATCAACA
Brassica oleracea acidic endochitinase (ChiA) gene, partial cds.
AF207562.1:76-95
TATCGATTTCAATATCGAACTTGGCTCTCC76TCAACACTGGGATGATCTTGTTAGGTACTAGGGGAACATTTTGATCTACA
Brassica rapa acidic endochitinase (ChiA) gene, partial cds.
AF207563.1:76-95
TATCGATTTCAMTATCGAACTTGGCTCTCC76TCAACACTGGGATGATCTTGTTAGGTACTAGGGGAACATTTTGATCAACA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44432620-44432639
TATCGATTTCAATATCGAACTTGGCTCTCC44432620TCAACACTGGGATGATCTTGTTAGGTACTAGGGGAACATTTTGATCTACA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47298159-47298178
TATCGATTTCAATATCGAACTTGGCTCTCC47298159TCAACACTGGGATGATCTTGTTAGGTACTAGGGGAACATTTTGATCTACA
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:44609365-44609384
TATCGATTTCAATATCGAACTTGGCTCGCC44609365TCAACACTGGGATGATCTTGTTAGGTAGTATTCTAGGAAAAGTTTTGATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGATCATCCCAGTGTTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGATCATCCCAGTGTTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.191 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGATCATCCCAGTGTTGA&k=0&no_gap=0&offset=0&limit=50
0.383 | 0.192 | search_minus_done; http://172.18.8.135:50400/match?q=TCAACACTGGGATGATCTTG&k=0&no_gap=0&offset=0&limit=39
0.390 | 0.007 | cgi_end;

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