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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 16:19:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrH104J14R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH104J14, genomic survey sequence.
DU128237.1:121-141
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT121CAAGATTGTCCACATATAGCGTGAGTAGTCAGAGAACAAATACATATTTCT
KBrB129J04F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB129J04, genomic survey sequence.
ED536623.1:530-550
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT530CAAGATTGTCCACATATAGCGTGAGTAGTCAGAGAACAAATACATATTTCT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:1792611-1792631
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT1792611CAAGATTGTCCACATATAGCGTGAGTAGTCAGAGAACAAATACATATTTCT
Brassica rapa genome, scaffold: A07.
LR031574.1:1763659-1763679
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT1763659CAAGATTGTCCACATATAGCGTGAGTAGTCATCAATGAGAACAAATACATA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:1774564-1774584
TTTTTCAAAAGCCTCACTCTTTTCTTTAAT1774564CAAGATTGTCCACATATAGCGTGAGTAGTCATCAATGAGAACAAATACATA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34687794-34687814
AGAAATATGTATTTGTTCTCTGACTACTCA34687794CGCTATATGTGGACAATCTTGATTAAAGAAAAGAGTGAGGCTTTTGAAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAGATTGTCCACATATAGCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGATTGTCCACATATAGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.244 | 0.235 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGATTGTCCACATATAGCG&k=0&no_gap=0&offset=0&limit=50
0.291 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=CGCTATATGTGGACAATCTTG&k=0&no_gap=0&offset=0&limit=45
0.291 | 0.001 | cgi_end;

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